PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00328-augustus-gene-1.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 256aa    MW: 29523.1 Da    PI: 6.5095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00328-augustus-gene-1.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw +yl
  maker-scaffold00328-augustus-gene-1.9-mRNA-1 14 KGTWTPEEDRKLIAYVTKYGCWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                                                  799*****************99************************97 PP
2Myb_DNA-binding56.56.5e-1867111147
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                   rg+ ++eE+e ++++++ lG++ W+tIa+ ++ gRt++++k++w++ 
  maker-scaffold00328-augustus-gene-1.9-mRNA-1  67 RGNYSKEEEETIIKLHESLGNR-WSTIASQLP-GRTDNEIKNHWHTN 111
                                                   899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.976961IPR017930Myb domain
SuperFamilySSF466891.62E-3011108IPR009057Homeodomain-like
SMARTSM007173.8E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231568IPR009057Homeodomain-like
CDDcd001675.80E-101661No hitNo description
PROSITE profilePS5129425.92262116IPR017930Myb domain
SMARTSM007178.4E-1766114IPR001005SANT/Myb domain
PfamPF002499.4E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2669117IPR009057Homeodomain-like
CDDcd001671.26E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVRTPCCDKS GMKKGTWTPE EDRKLIAYVT KYGCWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPNIKRGNY SKEEEETIIK LHESLGNRWS TIASQLPGRT DNEIKNHWHT NLKKRLKQNS  120
IAQEENSSSN NVFPREKSQK RLKGANNSHL HQETVEIIDS SMLSPQQSSS EFSSITTDTA  180
VAIITNMVVD DNVTSLEAYA ETNDNFWTEP FLADNSYIPS DFQAPLLDTE VLSPLFDEFF  240
CPYGLYKEHE GFDLCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRLKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4345509e-40AB434550.1 Fagus crenata FcMYBS5 mRNA for transcription factor MYBS5, partial cds.
GenBankAB4345779e-40AB434577.1 Fagus crenata FcMYBF3 mRNA for transcription factor MYBF3, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889531.10.0transcription factor MYB14-like
SwissprotQ9SJX84e-63MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2N9J0C41e-148A0A2N9J0C4_FAGSY; Uncharacterized protein
STRINGPOPTR_0013s14560.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-63myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]