PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00334-snap-gene-1.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 294aa    MW: 32332.5 Da    PI: 8.1285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00334-snap-gene-1.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-1297140855
                                                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                 Er RR+++++ f++L  llP++     +K +K++i+ +Av++I+sLq
  maker-scaffold00334-snap-gene-1.25-mRNA-1  97 TERERRKKMRNMFANLHALLPQL----PPKADKSTIVDEAVNCIQSLQ 140
                                                6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.97689139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1592156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1593152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.95E-994136No hitNo description
PfamPF000103.7E-997140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-897145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.33E-5226277No hitNo description
Gene3DG3DSA:3.30.70.2601.5E-4229276No hitNo description
CDDcd048739.44E-5230273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSEEGVGCHE SFFWENQSWG FTNSDNSAGG SEEKLGKKVP GSSSNSQAEI GMEEAVPLPI  60
VKKKGRGGVS KNGKGSNGEG RAGKGSGESD HDVHIWTERE RRKKMRNMFA NLHALLPQLP  120
PKADKSTIVD EAVNCIQSLQ QTLQKLQKQK QERLQGASST FGFEPNTITS QKLSYESREA  180
FLADQGSSNI QAIGTTTTCS NSLPVLRNPV MFQTWTSSNV VLNICGNDAQ ISVCSPKKPG  240
LLTSICYVME KHKIEVVSAQ ITSDYDRTMF MIQAHVSFLF YLNFPFSVYA TFTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922279.10.0transcription factor bHLH95
TrEMBLA0A2N9IAL91e-161A0A2N9IAL9_FAGSY; Uncharacterized protein
STRINGVIT_03s0063g00170.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-45bHLH family protein