PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00344-augustus-gene-0.29-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 439aa    MW: 48193.2 Da    PI: 5.9212
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00344-augustus-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-10249296455
                                                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  maker-scaffold00344-augustus-gene-0.29-mRNA-1 249 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 296
                                                    8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17243314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.98E-10243300No hitNo description
Gene3DG3DSA:4.10.280.103.9E-17245312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7249296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNRGYIQEEM LHCTDMTVLE RQRARMKWHE DQLQQSYFGG SGEFCGGGGG VFQGHEGHHQ  60
VQNFQGLVGT GGGDLVLGEV VSQTVKVVDP AGLKNRWAEL GRLELPDMGF ESCGLVNGTS  120
SEFEMTAGAI STTSSCPPKV VVAAAAEQKG KVSVPVGKES SKKRKADKVQ NTQVVLEDEP  180
KDKRSKLCAE DGESKITGQT STKNTTANNN NNNNRESSSD TSKENSKASE VQKPDYIHVR  240
ARRGQATDSH SLAERVRREK ISERMKYLQD LVPGCNKITG KAGMLDEIIN YVQSLQRQVE  300
FLSMKLAAVN PRLDFNIEDF FGKEMFPACS TSFPTIGMSS EMTNPAYLQF NPAQVVACCG  360
LEMGINSSDM ALRRTISAPM SIPETYIDTP CFTQLPPSST WDADLQNLLN LEFHQGRSTS  420
FPSQPFTGSI EASNLKMEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927205.10.0transcription factor bHLH63-like
TrEMBLA0A2N9ID040.0A0A2N9ID04_FAGSY; Uncharacterized protein
STRINGEMJ010630.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.19e-62cryptochrome-interacting basic-helix-loop-helix 1