PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00365-snap-gene-0.42-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 192aa    MW: 21532 Da    PI: 5.9545
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00365-snap-gene-0.42-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.26.5e-29103190291
                                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                                                fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+
  maker-scaffold00365-snap-gene-0.42-mRNA-1 103 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVR 168
                                                ******************************************9988..9******************* PP

                                       FAR1  70 kekdgkwevtkleleHnHelap 91 
                                                k ++gkw+vtk+++eH+H+l+p
  maker-scaffold00365-snap-gene-0.42-mRNA-1 169 KVSSGKWVVTKFVKEHTHPLTP 190
                                                *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-26103190IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MHDWELNYHI SFSYAVEFSV DGNLNGEVDG NSAELEDHRV NDENETGGSS VEGAFQQDQD  60
DKMNQDFSGM DIVPNAIPSV SMIPSDEPYV GQEFESEASA HAFYNAYATR VGFIIRVSKL  120
SRSRRDGSAI GRALVCNKEG YRMPDKREKI VRQRAETRVG CRAMILVRKV SSGKWVVTKF  180
VKEHTHPLTP GK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922057.11e-129protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2N9IML31e-120A0A2N9IML3_FAGSY; Uncharacterized protein
STRINGXP_010097543.11e-106(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-71FAR1 family protein