PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00367-augustus-gene-0.32-mRNA-2

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bZIP

Protein Properties

Length: 477aa MW: 52592 Da PI: 7.8565

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00367-augustus-gene-0.32-mRNA-2	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.4	2.3e-11	200	245	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le+ k ++Le+ ++L+ maker-scaffold00367-augustus-gene-0.32-mRNA-2 200 AKTLRRLAQNREAARKSRLRKKAYVQQLETsriKLAQLEQDLQRLR 245 6889************************974336666666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.0E-7	197	274	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.094	199	243	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-8	199	246	No hit	No description
Pfam	PF00170	2.2E-8	200	243	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.72E-20	201	251	No hit	No description
SuperFamily	SSF57959	4.13E-7	201	241	No hit	No description
PROSITE pattern	PS00036	0	204	219	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.1E-31	282	356	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MRSSYMASHR VRETGLSDSG PTNHHAPYAV FHGINAPSTS FLNQEGSAFD FGELEEAIVL 60 QGVQIRNDEA KAPLFTGRPA ATLEMFPSWP MRFQTTPGGS SKSGGESTDS GSAVNTLSSK 120 ADLAEAQLEP ESPISKKASS SDHQAFDQKH LQQFQQQQLH QEMASDTSIT GTSQNQSAAG 180 KAPMDKRKGT GSTSEKPLDA KTLRRLAQNR EAARKSRLRK KAYVQQLETS RIKLAQLEQD 240 LQRLRSQGLY LGGSGGGVGN ISSGAAMFDM EYARWLEDDH RHISELRAGL QAHLSDSDLR 300 QIVDGNISHY DELFRLKAVA AKSDVFHLIT GAWTSAAERC FFWMGGFRPS ELIKMLIGQL 360 DPLTEQQVMG IYSLQQSSNQ AEEALIQGEE QLKQSLVDTI AAGPAIDGSM HQMAIALGKL 420 SNLEGFVRQA DNLRQQTIHQ LRRILTVRQA ARCFLVIGEY YSRLRALSSL WASRPRE

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MRSSYMASHR VRETGLSDSG PTNHHAPYAV FHGINAPSTS FLNQEGSAFD FGELEEAIVL  60
QGVQIRNDEA KAPLFTGRPA ATLEMFPSWP MRFQTTPGGS SKSGGESTDS GSAVNTLSSK  120
ADLAEAQLEP ESPISKKASS SDHQAFDQKH LQQFQQQQLH QEMASDTSIT GTSQNQSAAG  180
KAPMDKRKGT GSTSEKPLDA KTLRRLAQNR EAARKSRLRK KAYVQQLETS RIKLAQLEQD  240
LQRLRSQGLY LGGSGGGVGN ISSGAAMFDM EYARWLEDDH RHISELRAGL QAHLSDSDLR  300
QIVDGNISHY DELFRLKAVA AKSDVFHLIT GAWTSAAERC FFWMGGFRPS ELIKMLIGQL  360
DPLTEQQVMG IYSLQQSSNQ AEEALIQGEE QLKQSLVDTI AAGPAIDGSM HQMAIALGKL  420
SNLEGFVRQA DNLRQQTIHQ LRRILTVRQA ARCFLVIGEY YSRLRALSSL WASRPRE

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023880411.1	0.0	transcription factor TGA9
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1Q3D847	0.0	A0A1Q3D847_CEPFO; BZIP_1 domain-containing protein/DOG1 domain-containing protein
STRING	EOY33449	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-177	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]