PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00369-augustus-gene-0.25-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 489aa MW: 53223.1 Da PI: 7.9743

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00369-augustus-gene-0.25-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.4e-39	132	192	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss maker-scaffold00369-augustus-gene-0.25-mRNA-1 132 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSS 192 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	129	189	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-32	134	190	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	136	190	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	138	174	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MLELKDPAIK LFGKTIPLPL RKQTLTNDSS VAEDCSEQNL HYLNISSSSR EESSAREREG 60 NKEPLGRELI ANKLEDGTSH QISEDSKDPT SSNTSENPKT PSVDIETSSI KASKNGEQSE 120 TSISQEKTLK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP 180 VGAGRRKNKN SSNSHYRHII VSEALQTARA NGVQNTAFGN NSTVLTFGSD SPLCESMASV 240 LNLAEKTQNR VPNVFHIPDQ RTLASGGDTG DDYSSGSTIT ASNSTEKEFN AGLQESAVKN 300 YQGFPPQLPC FQGTPWSLPW NSAPWSSAMP PPALCPPGFP VSFYPAPAYW GCNVSGSWNI 360 QCLSPPSSSL SQGSQSSVPN SPILGKHSRD GNIINPANSP KESVKENGSE RCVWIPKTLR 420 IDDPNEAAKS SIWTTLGIKN EKTNCINSGG LFKAFQAKGN DKSHVVETSA VLQANPAALS 480 RSLNFHEST

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MLELKDPAIK LFGKTIPLPL RKQTLTNDSS VAEDCSEQNL HYLNISSSSR EESSAREREG  60
NKEPLGRELI ANKLEDGTSH QISEDSKDPT SSNTSENPKT PSVDIETSSI KASKNGEQSE  120
TSISQEKTLK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW TAGGTMRNVP  180
VGAGRRKNKN SSNSHYRHII VSEALQTARA NGVQNTAFGN NSTVLTFGSD SPLCESMASV  240
LNLAEKTQNR VPNVFHIPDQ RTLASGGDTG DDYSSGSTIT ASNSTEKEFN AGLQESAVKN  300
YQGFPPQLPC FQGTPWSLPW NSAPWSSAMP PPALCPPGFP VSFYPAPAYW GCNVSGSWNI  360
QCLSPPSSSL SQGSQSSVPN SPILGKHSRD GNIINPANSP KESVKENGSE RCVWIPKTLR  420
IDDPNEAAKS SIWTTLGIKN EKTNCINSGG LFKAFQAKGN DKSHVVETSA VLQANPAALS  480
RSLNFHEST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023894887.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A2N9J6C1	0.0	A0A2N9J6C1_FAGSY; Uncharacterized protein
STRING	XP_008221604.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-97	cycling DOF factor 2