PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00403-snap-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 153aa    MW: 18635.5 Da    PI: 7.4059
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00403-snap-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.77.4e-083590262
                                       FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC 62
                                               fY++YA++  Fs+rk +  ++  n+ei++r+f C +e ++++ +     ++ + +  ++ C
  maker-scaffold00403-snap-gene-0.30-mRNA-1 35 FYRTYASQHAFSIRKGRFVTK--NKEIVRRDFFCHREEEEDRIQLL---KEANLSIRQIMC 90
                                               9***************98777..999**********9887765544...444444444554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-53576IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MKKNSDICGE KVLEEYNFEP FVGQCFLSEE ETFIFYRTYA SQHAFSIRKG RFVTKNKEIV  60
RRDFFCHREE EEDRIQLLKE ANLSIRQIMC IMELEKKVEH GHLPFFQKDI RFCIIDEKDT  120
QVYFDWSRSM DHRGNFKRIV IHKTCLLYMT CYC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2U1PNT95e-27A0A2U1PNT9_ARTAN; Protein FAR1-RELATED SEQUENCE 11
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1516549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.12e-10FAR1-related sequence 10