PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00417-augustus-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 289aa    MW: 32310.9 Da    PI: 6.9865
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00417-augustus-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05116135120
                                                    EEETTTTEEESSHHHHHHHH CS
                                        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                                    ++C+ C+k+F+r  n++ H+
  maker-scaffold00417-augustus-gene-0.26-mRNA-1 116 FSCTVCNKTFNRYNNMQMHM 135
                                                    89*****************9 PP
2zf-C2H214.40.00011201223123
                                                    EEETTTTEEESSHHHHHHHHHHT CS
                                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                    y C +Cgk+F  + + ++H +++
  maker-scaffold00417-augustus-gene-0.26-mRNA-1 201 YGCRKCGKPFAVRGDWRTHEKNC 223
                                                    67*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-598137No hitNo description
SMARTSM003550.079116138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.8E-6116135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.367116143IPR007087Zinc finger, C2H2
PfamPF128741.0E-4116135No hitNo description
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-5186221No hitNo description
Gene3DG3DSA:3.30.160.604.0E-5187221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355110201221IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MQTSSFAYLS SCESAYLEAE EEDEDSIFLS LGPPGQQIPK TKNPICNNNI PSSNHNFVNH  60
QNPSSEGGVT VALHIGPPTT SGSNDSSIPT HDTAAPLQAQ YWIPSPAQIL VGPTQFSCTV  120
CNKTFNRYNN MQMHMWGHGS QYRKGPESLR GTKPASSMLR LPCYCCAEGC KNHIEHPRSR  180
PLKDFRTLQT HYKRKHGAKP YGCRKCGKPF AVRGDWRTHE KNCGKLWFCI CGSDFKHKRS  240
LKDHVRAFGD GHAPYTITTT MCEVEEEDDD NDNDDEENDI DGGRGSFCF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647907.11e-141PREDICTED: zinc finger protein WIP6
RefseqXP_012082035.11e-140zinc finger protein WIP6
RefseqXP_021614528.11e-140zinc finger protein WIP6-like
SwissprotQ9FX681e-125ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2N9F1Q51e-165A0A2N9F1Q5_FAGSY; Uncharacterized protein
STRINGVIT_01s0011g03100.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-119C2H2-like zinc finger protein