PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00437-snap-gene-0.38-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 298aa    MW: 34609.6 Da    PI: 9.3657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00437-snap-gene-0.38-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64.1e-179861699
                                               EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                                         B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                                               + +p++f++++g+    s    l+ +sg +W+v+l  + ++g+++l+kGW eF+k   +k+g f+vF+++
  maker-scaffold00437-snap-gene-0.38-mRNA-1  9 IGIPRNFTRRYGQG--LSNSAFLKLPSGAKWNVEL--TESDGEVWLQKGWPEFAKYYSVKQGHFLVFRYE 74
                                               579********744..7788***************..********************************* PP

                                               SSSEE..EEEEE-S CS
                                         B3 86 grsefelvvkvfrk 99
                                               g+s f  +v +f++
  maker-scaffold00437-snap-gene-0.38-mRNA-1 75 GNSHF--YVLIFDE 86
                                               *9999..**99986 PP
2B352.77.7e-17194287298
                                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHH CS
                                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWk 66 
                                                fkv ++ ++l ++ l +pk+f+++++++   + ++ l  ++g  W v+++  k+ ++   + +   Wk
  maker-scaffold00437-snap-gene-0.38-mRNA-1 194 FKVVIQQSYLDRN-LNIPKDFVKKYSNI--LHGDVNLCVSDGSNWPVEFC--KRTDEnlkCRFNCRWK 256
                                                7999999999999.***********877..45579999999********4..4444445799999*** PP

                                                HHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                                         B3  67 eFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                                                eF+k+n+L++gD++ F+l++  ++f  +v +fr
  maker-scaffold00437-snap-gene-0.38-mRNA-1 257 EFAKDNNLEVGDVCAFELIEAtKTF--KVVIFR 287
                                                *******************865666..887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.535187IPR003340B3 DNA binding domain
SMARTSM010191.4E-10287IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-20886IPR015300DNA-binding pseudobarrel domain
CDDcd100172.91E-16985No hitNo description
Gene3DG3DSA:2.40.330.106.0E-21987IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-14986IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-24186287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-23187287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.379192289IPR003340B3 DNA binding domain
CDDcd100173.56E-21192287No hitNo description
SMARTSM010194.6E-14194289IPR003340B3 DNA binding domain
PfamPF023624.7E-15194287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MCERLILHIG IPRNFTRRYG QGLSNSAFLK LPSGAKWNVE LTESDGEVWL QKGWPEFAKY  60
YSVKQGHFLV FRYEGNSHFY VLIFDESATE IDYYFNTSHG GKGKLHNEFR APNIEDIESY  120
SAIEFLGSFP PSLKTRDKSP LPYFRPHKIM KTNSRAKGVK GISTTVRMIQ PLNNNETARA  180
LQKARAFKPK NPYFKVVIQQ SYLDRNLNIP KDFVKKYSNI LHGDVNLCVS DGSNWPVEFC  240
KRTDENLKCR FNCRWKEFAK DNNLEVGDVC AFELIEATKT FKVVIFRMYE DNCRAPYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1517029025144B3 domain-containing transcription factor VRN1
4i1k_B3e-1517029025144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922955.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9JC451e-108A0A2N9JC45_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-41B3 family protein