PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00501-snap-gene-1.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 236aa    MW: 25578.1 Da    PI: 7.1807
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00501-snap-gene-1.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0003204226123
                                               EEETTTTEEESSHHHHHHHHHHT CS
                                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                               ++C+ Cg  F++   L  H+r+H
  maker-scaffold00501-snap-gene-1.8-mRNA-1 204 HECSVCGAEFTSGQALGGHMRRH 226
                                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.47E-6200228No hitNo description
Gene3DG3DSA:3.30.160.605.1E-4202226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.0E-13203228IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93204231IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEAQEEAMMG SRDQTHIVKG KRTKRQRPQS PIPFAMITTT SGEDIIGGGA GSGGTTTGGD  60
CYNVDILNTN NIINWSPPAT TSTELQDSTE EEEDMANCLI LLAKGQSVRS RTLGGHRASH  120
KKTKALAAAA EEKKQFLLSS EDDSIEEAQQ QQQQVIIKKN NSDHFSSSLS LQLSNSSRGL  180
YSNNNNINRS YNTNNNNTNN NKVHECSVCG AEFTSGQALG GHMRRHRSPM GTSSST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8558169e-52KP855816.1 Quercus variabilis microsatellite Qv1776 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007010041.21e-53PREDICTED: zinc finger protein ZAT5
RefseqXP_023879691.13e-53zinc finger protein ZAT5
RefseqXP_027364640.11e-53zinc finger protein ZAT5
TrEMBLA0A2N9IVC42e-51A0A2N9IVC4_FAGSY; Uncharacterized protein
STRINGEOY188517e-52(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-12C2H2 family protein