PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00522-augustus-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ARF
Protein Properties Length: 662aa    MW: 74874.1 Da    PI: 6.177
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00522-augustus-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.9e-10117186167
                                                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETT CS
                                             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksg 57 
                                                    f+k+lt+sd++++g +++pk++a+e+       ++     ++l+ +d++g +W ++++yr+  g
  maker-scaffold00522-augustus-gene-0.31-mRNA-1 117 FIKTLTTSDTSTHGGFSVPKRHATEFlppldttQQT--PAQELVAKDLHGYEWHFRHTYRGENG 178
                                                    99***************************9975433..3459***************9998887 PP

                                                    EEEE-TTHHH CS
                                             B3  58 ryvltkGWke 67 
                                                    +  l+ G ++
  maker-scaffold00522-augustus-gene-0.31-mRNA-1 179 Q--LRVGVRR 186
                                                    7..6666665 PP
2Auxin_resp111.96.2e-37212294183
                                     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvv 64 
                                                    a ha+st+++F+v+Y+P++s+seF++++++++k+ ++ +s+G+Rf+m+fe+e++se+r++Gt+v
  maker-scaffold00522-augustus-gene-0.31-mRNA-1 212 AFHAVSTGTMFTVYYHPWTSPSEFIIPFDQYMKSAENYYSIGTRFRMRFEGEECSEKRYMGTIV 275
                                                    689************************************************************* PP

                                     Auxin_resp  65 gvsdldpvrWpnSkWrsLk 83 
                                                    g +d+d +rWp+S+Wr+L+
  maker-scaffold00522-augustus-gene-0.31-mRNA-1 276 GNKDIDCIRWPGSEWRCLE 294
                                                    *****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-23107176IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-18114179IPR015300DNA-binding pseudobarrel domain
CDDcd100176.37E-9116183No hitNo description
PfamPF023626.4E-8117186IPR003340B3 DNA binding domain
PfamPF065072.3E-34212293IPR010525Auxin response factor
SuperFamilySSF542773.34E-5560640No hitNo description
PfamPF023096.0E-6561643IPR033389AUX/IAA domain
PROSITE profilePS5174521.208564648IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MGGVAESTER KRRIQTGLLP HSNQGEKDEL YDELWHACAG PLVYIPRAGE RVFYFPQGHM  60
EQVEAYTSED GIMEMPIYNL RSKILCKVVY VQLKQDEPSS EDENDLSLPQ RTGVCSFIKT  120
LTTSDTSTHG GFSVPKRHAT EFLPPLDTTQ QTPAQELVAK DLHGYEWHFR HTYRGENGQL  180
RVGVRRAAKQ LNSPSVSVIS GYSMQHGILA GAFHAVSTGT MFTVYYHPWT SPSEFIIPFD  240
QYMKSAENYY SIGTRFRMRF EGEECSEKRY MGTIVGNKDI DCIRWPGSEW RCLEVKWDAT  300
PDTFLHPERV SPWNIELIES TYKRSTSIIS KQNRKRPVNP SLSECSCLSR DGLVQYPAEY  360
TCSKHLRVFQ GQDKRNTGAQ ELDAQTPEVL PHLAAPSNPN WGHRHLGLEN QLCSPMHELS  420
QCNSNNISYL SQNIAAPCPA YQWHPIITCD NVAASRNISV SNVTSSNSGY QECRASEMRD  480
ENEALLAPST GCYRYRLFGV NLFNSYPELP SPQVATYCEL SSPCSVPPKS QSSVCQTIQV  540
SEPSKSISDV LLDKQCNNCS ITNRSCTKVR KYGNALGRSV DLMRFDGYDE LISELDHMFD  600
FKGSLINGSS GWHVTFTDYE GDMMPIADYP WQEFCLMVRK MVIYPKEEID RQNPGSPDPT  660
PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A1e-1002832017357Auxin response factor 1
4ldx_B1e-1002832017357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914063.10.0auxin response factor 23-like isoform X1
SwissprotQ94JM31e-117ARFB_ARATH; Auxin response factor 2
TrEMBLA0A2N9GSP30.0A0A2N9GSP3_FAGSY; Auxin response factor
STRINGXP_006479861.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-119auxin response factor 2
Publications ? help Back to Top
  1. Chao WS,Doğramaci M,Foley ME,Horvath DP,Anderson JV
    Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula).
    PLoS ONE, 2012. 7(8): p. e42839
    [PMID:22916167]
  2. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Lyons R, et al.
    Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(4): p. e0121902
    [PMID:25849296]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Zhao S,Zhang ML,Ma TL,Wang Y
    Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K+ Transporter Gene HAK5 in Response to Low Potassium Stress.
    Plant Cell, 2016. 28(12): p. 3005-3019
    [PMID:27895227]
  8. Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
    ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
    J Integr Plant Biol, 2017. 59(1): p. 30-43
    [PMID:28074634]
  9. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  10. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  11. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]
  12. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  14. Sarkar Das S, et al.
    Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination.
    Sci Rep, 2018. 8(1): p. 1233
    [PMID:29352229]