PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00535-augustus-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 241aa    MW: 26471.6 Da    PI: 5.497
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00535-augustus-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.71.9e-38798191
                                         DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65
                                                   +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r+da++s+ yeA
  maker-scaffold00535-augustus-gene-0.30-mRNA-1  7 SCGACKFLRRKCTTECVFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRRDAANSISYEA 72
                                                   6************************978************************************** PP

                                         DUF260 66 earardPvyGavgvilklqqqleqlk 91
                                                    ar+rdP+yG+vg i++lqqql +++
  maker-scaffold00535-augustus-gene-0.30-mRNA-1 73 LARVRDPIYGCVGDIFALQQQLTKSD 98
                                                   *********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.2526113IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-36797IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTGTGSSCGA CKFLRRKCTT ECVFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN  60
RRDAANSISY EALARVRDPI YGCVGDIFAL QQQLTKSDTI YLALQVASLL EEIEVIGNQM  120
ANFAVGVANC GSSQATTNLY NGLQFSSQHD VISPFSSQHD VLSTQYYQNQ QAPLLFHAGS  180
TAANQGFDSQ MDIQLPPLYG WENQNLFDDS GLNPSGKLLE GIDEDNFKCY PWLYNSTNAK  240
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-34396799LOB family transfactor Ramosa2.1
5ly0_B1e-34396799LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928452.11e-164LOB domain-containing protein 33-like
SwissprotQ9LHS86e-51LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A2N9IFG81e-139A0A2N9IFG8_FAGSY; Uncharacterized protein
STRINGVIT_13s0019g02060.t015e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.19e-42LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]