PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00594-snap-gene-0.47-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

G2-like

Protein Properties

Length: 157aa MW: 17481.3 Da PI: 4.798

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00594-snap-gene-0.47-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.4	2.8e-32	92	145	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ maker-scaffold00594-snap-gene-0.47-mRNA-1 92 PRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.628	88	148	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-30	88	146	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-15	90	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-23	92	147	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-9	93	144	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MTEGLEAYDE EKSDRSEELA ENTSVVSSQM CSSFDLNEEA SSQDDDNIAK VGELSIEDDV 60 NGTDGNSANN DTSGEGNEKR ARVRQYVRSK MPRLRWTPDL HLSFVHAVER LGGQERATPK 120 LVLQLMNVRG LSIAHVKSHL QMYRSKKLDE AGQGKVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	93	147	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	93	147	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	93	147	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	93	147	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023888109.1	1e-104	uncharacterized protein LOC112000243
TrEMBL	A0A2N9HX70	1e-94	A0A2N9HX70_FAGSY; Uncharacterized protein
STRING	EOY27983	3e-69	(Theobroma cacao)
STRING	POPTR_0011s07270.1	3e-69	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-42	G2-like family protein