PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00625-snap-gene-0.46-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 163aa    MW: 19297 Da    PI: 7.8628
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00625-snap-gene-0.46-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.49.7e-131284290
                                       FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71
                                                Yn+YA ++GFsvrk+k ++               k+g+++++++  ++++ +  +trtgC+a++  + +
  maker-scaffold00625-snap-gene-0.46-mRNA-1 12 LYNDYAIRIGFSVRKEKLRYA--------------KNGFPRDSDHL-DDKKFKILQTRTGCEASFLFTVT 66
                                               7**************998887..............78999998888.8899999**************99 PP

                                       FAR1 72 kdgkwevtkleleHnHela 90
                                                +g+w+vt+++ +HnHela
  maker-scaffold00625-snap-gene-0.46-mRNA-1 67 -NGEWKVTHFNPNHNHELA 84
                                               .****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-101284IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVVHSEEEAY KLYNDYAIRI GFSVRKEKLR YAKNGFPRDS DHLDDKKFKI LQTRTGCEAS  60
FLFTVTNGEW KVTHFNPNHN HELAKPEKRP FLRSESTNNV FQHMTCKIMR LIEFVHEYEK  120
ASKNMHTEEL EEDFRCKQGT SFQIVQNCGL FATCIICIYL YNV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023880098.18e-53protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2N9J9388e-39A0A2N9J938_FAGSY; Uncharacterized protein
STRINGXP_008229713.13e-26(Prunus mume)
STRINGXP_008359347.18e-26(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-09FAR1 family protein