PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00678-augustus-gene-0.21-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 530aa    MW: 57719.4 Da    PI: 8.1221
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00678-augustus-gene-0.21-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30288346259
                                                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                    +Dg++WrKYGqK+ kg+++pr+YYrCt+  +Cpv+k+v+r+aed +++++tYeg+Hnh+
  maker-scaffold00678-augustus-gene-0.21-mRNA-2 288 NDGCQWRKYGQKMAKGNPCPRAYYRCTMGaSCPVRKQVQRCAEDRSILITTYEGNHNHP 346
                                                    8***************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-33272348IPR003657WRKY domain
SuperFamilySSF1182901.29E-27281348IPR003657WRKY domain
PROSITE profilePS5081128.495282348IPR003657WRKY domain
SMARTSM007743.7E-36287347IPR003657WRKY domain
PfamPF031061.7E-26288346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDISTYPIRN SGDEDVPSPA CSTWKPVIVN EMDFFPTDRN CSKESHRVNV KKESAQGVMI  60
GCLGLNTGLN LTANTSSEKS NEDDRTNNTS NKKSFNELIA LQAELDRMSM ENERLKVLLK  120
QVNDNYNSLQ IHFATLMQHQ QTRKAKTGIV DEVINGDKSN GGGLTRQFMD LHRVEKDEPS  180
HTSSEGGLRD CSRSPMKDKV ELEYKKQKIC SSSSEIIQLD LDKSDSRNGT TTTGREDSPD  240
QAIPGPVLNK APRFTTSRDA DHQHPETLSM IRKARVSVRA RSDGTTINDG CQWRKYGQKM  300
AKGNPCPRAY YRCTMGASCP VRKQVQRCAE DRSILITTYE GNHNHPLPPA AMATASYTSA  360
AASMLLSGSM PSADALMNSN ILARTALSSS PSFATLSASA PFPTVTLDLT QPHNASQFQR  420
AVQGQFNMFS SSLPHFMSAP QVFGQALQNQ SKYVGLHSSQ GMELPPFASS NQIHTPSLSD  480
AIGSATAAIT ADPNFTAALV AAITSIIGNV HSNHSGNSTQ PTARNNNDKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21274350176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901203.10.0probable WRKY transcription factor 31
TrEMBLA0A2N9J4920.0A0A2N9J492_FAGSY; Uncharacterized protein
STRINGXP_010252466.11e-154(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-88WRKY family protein