PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00715-augustus-gene-0.35-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 202aa    MW: 23106.4 Da    PI: 8.4958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00715-augustus-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.5e-1350101154
                                                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                    +r  hn+ Er RR+++N  +++Lr+llP+a   +++Kls  ++  +  +YI +L
  maker-scaffold00715-augustus-gene-0.35-mRNA-1  50 KRIFHNASERDRRKKMNALYSTLRSLLPSA--DQAEKLSVPTTISRMLKYIPKL 101
                                                    6899*************************5..5******************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1549122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.50349101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-1050106No hitNo description
PfamPF000103.0E-1050101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1351119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-855107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSHTDNNCVH RETEASDSLA HDDQSPYQPK VELNLCTSSM PIGGDPRMAK RIFHNASERD  60
RRKKMNALYS TLRSLLPSAD QAEKLSVPTT ISRMLKYIPK LEQEVEVLMQ KKEELISRIS  120
RQGEQIHQEN HRQIVGRSSL SVVSANWLNE REVMIQISTY KVHKSPLANI LLNLEKDGFL  180
VLNVSSFECF GGRVFHNLHL QV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919227.11e-105transcription factor ORG2-like
RefseqXP_023919228.11e-106transcription factor ORG2-like
TrEMBLA0A2N9FDQ82e-83A0A2N9FDQ8_FAGSY; Uncharacterized protein
STRINGVIT_13s0047g00450.t013e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.15e-50bHLH family protein