PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00747-snap-gene-0.55-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CPP
Protein Properties Length: 218aa    MW: 24172.6 Da    PI: 8.1669
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00747-snap-gene-0.55-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR52.41.1e-163170140
                                        TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                                               k++kgCnCkk+ ClkkYCeCf+a++ Cse+CkC dCkN e
  maker-scaffold00747-snap-gene-0.55-mRNA-1 31 KHNKGCNCKKTWCLKKYCECFQANVLCSENCKCVDCKNFE 70
                                               589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163419.489171IPR005172CRC domain
SMARTSM011142.3E-183172IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.9E-133469IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKDVHLKQQS IEIKESHVRK DEENVSPMVG KHNKGCNCKK TWCLKKYCEC FQANVLCSEN  60
CKCVDCKNFE GSEEYLAVLH GDHSNTNSCI QQANAGLSGA FDSLGKKFSP GLGKRKGHEL  120
LDSQEKNSQI QRLTLHHKPM NPLGGSDPLS ALSVYPVRQV IGSPVLHSPN FRYRSLLADV  180
IQPEDTKKLC SCLVLVSEFA QIGAGYEGSI TRLGTIYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-14208063132Protein lin-54 homolog
5fd3_B6e-14208063132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875608.11e-123protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD14e-48TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2N9F0E91e-102A0A2N9F0E9_FAGSY; Uncharacterized protein
TrEMBLA0A2N9HNV34e-98A0A2N9HNV3_FAGSY; Uncharacterized protein
STRINGXP_008242674.11e-51(Prunus mume)
STRINGXP_006475649.12e-51(Citrus sinensis)
STRINGXP_006451190.12e-51(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-50Tesmin/TSO1-like CXC domain-containing protein