PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00779-augustus-gene-0.29-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 233aa    MW: 25347.1 Da    PI: 8.6918
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00779-augustus-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26080.43e-252117197
                                         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer..... 54 
                                                    +C++C+vlr++C+++C+l++++     p++q++++ +v+k+FG++ ++++++++pe++r     
  maker-scaffold00779-augustus-gene-0.29-mRNA-1   2 SCNGCRVLRKGCSDNCMLRQCLkwidkPQAQAHATLFVAKFFGRACLMSFISTVPEHHRpgayi 65 
                                                    6*************************************************************** PP

                                         DUF260  55 .........edamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                                                               +++sl++eA  r+ +Pv+G+vg++++++++++++++e++l+
  maker-scaffold00779-augustus-gene-0.29-mRNA-1  66 qtyisvefcVSLFQSLLFEAVGRTVNPVNGVVGLLWTGNWNVCRAAVETVLR 117
                                                    ********99************************************998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.161121IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-182114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDNCMLR QCLKWIDKPQ AQAHATLFVA KFFGRACLMS FISTVPEHHR  60
PGAYIQTYIS VEFCVSLFQS LLFEAVGRTV NPVNGVVGLL WTGNWNVCRA AVETVLRGGV  120
LQAQPEFLGG QVSMLELPNP SKAKAGNNNC VSSCLLGSNK KGASDKVENL QQLDLDLCLT  180
AGSLQRRTEI DGGRRRKRAA TPSTEESEMT SLGSSNSCGT EGGDQRKILR LFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827382.11e-81PREDICTED: LOB domain-containing protein 38-like isoform X1
SwissprotQ9SN236e-59LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2I4F6V82e-80A0A2I4F6V8_JUGRE; LOB domain-containing protein 38-like isoform X1
STRINGEOX984503e-69(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-61LOB domain-containing protein 38