PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00803-snap-gene-0.44-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 143aa    MW: 15077.6 Da    PI: 9.1993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00803-snap-gene-0.44-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-191262155
                                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                               + y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta +Aa a+++a+++++g
  maker-scaffold00803-snap-gene-0.44-mRNA-1 12 CNYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFPTAIGAALAYDEAARAMYG 62
                                               56*****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-141262IPR001471AP2/ERF domain
CDDcd000183.96E-311272No hitNo description
PROSITE profilePS5103222.1551370IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-211370IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-321371IPR001471AP2/ERF domain
SMARTSM003801.0E-361376IPR001471AP2/ERF domain
PRINTSPR003671.9E-91425IPR001471AP2/ERF domain
PRINTSPR003671.9E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKGKGGPENS RCNYRGVRQR TWGKWVAEIR EPNRGKRLWL GTFPTAIGAA LAYDEAARAM  60
YGSAARLNFP NVKISSFLKD SPKDSSLVAT TSGSSSVATA GGSESSDESE GSASEGIDLN  120
PVSPCVKHDD GVGESRANSS PPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-181370563ATERF1
3gcc_A2e-181370563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886168.13e-80putative dehydration-responsive element-binding protein 2H
TrEMBLA0A2N9IY712e-75A0A2N9IY71_FAGSY; Uncharacterized protein
STRINGXP_008230119.15e-50(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.17e-35ERF family protein