PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00806-snap-gene-0.57-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bZIP

Protein Properties

Length: 400aa MW: 43254.2 Da PI: 9.9075

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00806-snap-gene-0.57-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.4	2.1e-15	322	372	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ e+ ++ maker-scaffold00806-snap-gene-0.57-mRNA-1 322 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQAEMMEM 372 79****************************************998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-14	318	383	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.53	320	371	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-11	322	371	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.2E-15	322	371	No hit	No description
Pfam	PF00170	1.5E-13	322	374	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.56E-27	322	376	No hit	No description
PROSITE pattern	PS00036	0	325	340	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MGTNLNFKNS FIMGESEADG NGNGRPPGNF PLTRQSSVYS LTFDEFQNTM GGSLGKDFGT 60 LSQKTVDEVW RDISKDESGN GSSSVPQAQR QQTLGEMTLE EFLVRAGVVR EEIQAQNQLD 120 MVNVKPNTTA AYFGNSGFGY GFQQTGGGGY MENRISEISS NGNGNSNGQF SIQRSQNLPL 180 NVNGVRSNQT QLSRPQQQQQ QQQQQQQQQQ QQQNLQPQIL PKQVPPVAYA MPQLGGPGMM 240 VQSAAAVLQG GGGGGMGMVG LGGGGGGGGV TVAAGSPANQ LSSDGLGKSN GDMSSVSPVP 300 YGYNGGLRGR RCSGAVEKVV ERRQRRMIKN RESAARSRAR KQAYTMELEA EVAKLKEENE 360 ELRKKQAEMM EMQKNQVLEI MNTPRGVKKQ CLRRTQTGPW

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MGTNLNFKNS FIMGESEADG NGNGRPPGNF PLTRQSSVYS LTFDEFQNTM GGSLGKDFGT  60
LSQKTVDEVW RDISKDESGN GSSSVPQAQR QQTLGEMTLE EFLVRAGVVR EEIQAQNQLD  120
MVNVKPNTTA AYFGNSGFGY GFQQTGGGGY MENRISEISS NGNGNSNGQF SIQRSQNLPL  180
NVNGVRSNQT QLSRPQQQQQ QQQQQQQQQQ QQQNLQPQIL PKQVPPVAYA MPQLGGPGMM  240
VQSAAAVLQG GGGGGMGMVG LGGGGGGGGV TVAAGSPANQ LSSDGLGKSN GDMSSVSPVP  300
YGYNGGLRGR RCSGAVEKVV ERRQRRMIKN RESAARSRAR KQAYTMELEA EVAKLKEENE  360
ELRKKQAEMM EMQKNQVLEI MNTPRGVKKQ CLRRTQTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891238.1	0.0	bZIP transcription factor TRAB1 isoform X2
Swissprot	Q9M7Q4	2e-83	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A2I4DF73	1e-148	A0A2I4DF73_JUGRE; ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2
STRING	cassava4.1_007256m	1e-124	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	6e-64	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]