PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00828-snap-gene-0.36-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 257aa    MW: 28801.7 Da    PI: 9.1107
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00828-snap-gene-0.36-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.49.1e-17112167256
                                                T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                   Homeobox   2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 
                                                rk+ ++tkeq   Lee F+++++++ + +++ LA++l+L  rqV vWFqNrRa+ k
  maker-scaffold00828-snap-gene-0.36-mRNA-1 112 RKKLRLTKEQSALLEESFKQHSTLNPQkQKQALARQLNLRPRQVEVWFQNRRARTK 167
                                                788899******************97527899**********************98 PP
2HD-ZIP_I/II119.51.7e-38112202191
                                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLk 67 
                                                +kk+rl+keq++lLEesF+++++L+p ++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk
  maker-scaffold00828-snap-gene-0.36-mRNA-1 112 RKKLRLTKEQSALLEESFKQHSTLNPqKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK 179
                                                69***********************945799************************************* PP

                                HD-ZIP_I/II  68 raydalkeenerLekeveeLreel 91 
                                                +++++l++en+rL+ke +eL+ +l
  maker-scaffold00828-snap-gene-0.36-mRNA-1 180 KCCETLTDENRRLQKELQELK-AL 202
                                                ********************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1698167IPR009057Homeodomain-like
SuperFamilySSF466891.34E-16102170IPR009057Homeodomain-like
PROSITE profilePS5007116.52108169IPR001356Homeobox domain
SMARTSM003897.6E-12110173IPR001356Homeobox domain
CDDcd000863.10E-15112170No hitNo description
PfamPF000463.5E-14112167IPR001356Homeobox domain
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PfamPF021834.7E-10169203IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.0E-25169212IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDFNDVCNTG LVLGLGLTAS AQESSSPSKV PKNKACSNFT PKVAPRKIID VNKGYEESID  60
LYRQASPPHS AVSSFSSGRV KRERDLSSEE VEAADRVSSR ISDEDEDGPN ARKKLRLTKE  120
QSALLEESFK QHSTLNPQKQ KQALARQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK  180
CCETLTDENR RLQKELQELK ALKLAQPLYM HMPAATLTMC PSCERIGGVG ENASKSPFSM  240
APKPHFYNPF TNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161169RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018857289.11e-156PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-97HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2N9J7A31e-163A0A2N9J7A3_FAGSY; Uncharacterized protein
STRINGEOX917921e-138(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-87HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]