PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00852-augustus-gene-0.17-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 298aa    MW: 33736 Da    PI: 7.3682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00852-augustus-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-151461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   rg+WT  Ed++l +++k++G g W+  +++ g++R++k+c++rw++yl
  maker-scaffold00852-augustus-gene-0.17-mRNA-1 14 RGAWTVLEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                                                   89********************************************97 PP
2Myb_DNA-binding51.62.1e-1667110146
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                    rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  maker-scaffold00852-augustus-gene-0.17-mRNA-1  67 RGNITRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                                                    7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.731961IPR017930Myb domain
SuperFamilySSF466891.11E-2712108IPR009057Homeodomain-like
SMARTSM007177.3E-131363IPR001005SANT/Myb domain
PfamPF002499.1E-141461IPR001005SANT/Myb domain
CDDcd001671.08E-91661No hitNo description
PROSITE profilePS5129424.98662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2465116IPR009057Homeodomain-like
SMARTSM007172.6E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1467110IPR001005SANT/Myb domain
CDDcd001671.04E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTVL EDKILTEYIK LHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TRDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKVQDHL  120
NHTSKRSNQV HTQEKQNHSV ERSAGGPAEA KIGSSCVVRT KATKCTKAVN VITSEQPIQL  180
DQHNQIIETK PEVAVQSSMV HHHDPVDFSQ FMLGENNPSN FMMDFEMEGN FISDFLDMDF  240
SQLPCFEDGG DSSSNTCDKG HSSPISDHTH LVSGDRLHGS NFQSMGPLIE SELDWLCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023891575.10.0myb-related protein 308-like
SwissprotQ388502e-60MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2N9ETC31e-171A0A2N9ETC3_FAGSY; Uncharacterized protein
STRINGEOY272331e-119(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-63myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]