PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00859-augustus-gene-0.50-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 257aa    MW: 28621.6 Da    PI: 8.5757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00859-augustus-gene-0.50-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.4e-1472118354
                                                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                    ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++++k+L
  maker-scaffold00859-augustus-gene-0.50-mRNA-1  72 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGTVIDHVKDL 118
                                                    79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.26969118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1572121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-1372127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-1172121No hitNo description
PfamPF000102.1E-1172118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1175124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0018166201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MENCYHGGWP EEENWAQCHA PLNNESSYLV PWPAPPHVSA STRFQFHGLP SWSMPIEGVA  60
DDGGGATASS SKSHSQAEKR RRDRINAQLA TLRKLIPKSD KMDKAALLGT VIDHVKDLKR  120
KANEVSKACT LPTEVDEVTI DYDLAQDVKL TNVDNNSKDN VFIRASFCCD DRPELFTELI  180
HVLKTLRLTA VKADIASVGG RIRSILVLCT KETEVGVCVS TLRQSLKLVL NKIASSSVQS  240
NYRIRSKRQR FFLPCSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821912.11e-131PREDICTED: transcription factor bHLH51
TrEMBLA0A2N9ITD11e-176A0A2N9ITD1_FAGSY; Uncharacterized protein
STRINGEOY177291e-112(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.17e-55bHLH family protein