PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00868-augustus-gene-0.31-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 215aa MW: 25189.8 Da PI: 8.619

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00868-augustus-gene-0.31-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.3e-06	91	134	5	53
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 h ++Er RR++ ++ + +L ++lP +K +K +i + A I+ maker-scaffold00868-augustus-gene-0.31-mRNA-1 91 HMMNERMRREKQKQNYMTLHSMLPFG-----TKSDKNSIIQTAATKIQV 134 889**********************6.....455555566656555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.22E-6	84	137	No hit	No description
SuperFamily	SSF47459	1.02E-10	84	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.607	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-8	90	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0036	92	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MMDLFFPLEL QCDNDIFWYE ANQAFEAFQP QVNQSAFVPY RDTPRKEFGA ENSGNMKNCV 60 NVKKRMVEFL RRSWHPRNEI QEYEKERSFR HMMNERMRRE KQKQNYMTLH SMLPFGTKSD 120 KNSIIQTAAT KIQVLQKCRE ELQRRNLEAE KNLAAVEGER VEGAKIKLKV ANPTSGVDSM 180 VEVLKCLKHL GLKTGTIRSN FTAQEFSAEL EIETE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023915914.1	1e-144	transcription factor bHLH92
Refseq	XP_023915915.1	1e-144	transcription factor bHLH92
TrEMBL	A0A2N9EJB9	1e-109	A0A2N9EJB9_FAGSY; Uncharacterized protein
STRING	EMJ28464	2e-70	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12572	27	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	8e-47	bHLH family protein