PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00873-snap-gene-0.35-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 441aa MW: 50544.9 Da PI: 5.2356

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00873-snap-gene-0.35-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	59.3	1.3e-18	9	84	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgekt 119 +e+ wyfF++rd+ky++g+r+nr++ +g Wk tg ++ + +e +g +++L +y+g + +k+++t maker-scaffold00873-snap-gene-0.35-mRNA-1 9 NEEAWYFFTPRDRKYPNGSRPNRSAGDGSWKPTGIPIRIGQ-FDEYTGWRRSLDYYEGshEGEKSKRT 75 5789*********************************99.8899******8744667889 PP NAM 120 dWvmheyrl 128 +W m ey+l maker-scaffold00873-snap-gene-0.35-mRNA-1 76 KWKMIEYTL 84 *******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.593	1	99	IPR003441	NAC domain
SuperFamily	SSF101941	9.29E-22	7	94	IPR003441	NAC domain
Pfam	PF02365	4.8E-8	11	84	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MVKNYKLINE EAWYFFTPRD RKYPNGSRPN RSAGDGSWKP TGIPIRIGQF DEYTGWRRSL 60 DYYEGSHEGE KSKRTKWKMI EYTLDKWVLC KVYEKVTSKK DEDDNNTQNT QSDQRNPSTS 120 PSVSNHDSSP RIIPNSLDVH GNQLEATTST PLNHTHVYHM PPQIRHFNPS LGSTYNFYNQ 180 SYHNMINSTP RVVPNSLDVH GNHLEATTST TLNHTHAYHE PLLVSTCNFS NQSNYNMIDS 240 SPRVAPNSLD VHENHLGATT STTLNHAHVY YEPLQTQHFY SSWGSANNFP NQYPVNYNME 300 MTTLNHTAMS SSSEQPTHVR EDDPLLEAHG INTFGSKQEQ QDDLSKMTSM TTNSHELPTH 360 ARKYEPPLPE VHEDDTFGSK QKQQDYLSET GDIINDWVLS DSDFDISNLD STDWLLSDSD 420 FDMIDLDFSD ILDDDNHKPN S

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MVKNYKLINE EAWYFFTPRD RKYPNGSRPN RSAGDGSWKP TGIPIRIGQF DEYTGWRRSL  60
DYYEGSHEGE KSKRTKWKMI EYTLDKWVLC KVYEKVTSKK DEDDNNTQNT QSDQRNPSTS  120
PSVSNHDSSP RIIPNSLDVH GNQLEATTST PLNHTHVYHM PPQIRHFNPS LGSTYNFYNQ  180
SYHNMINSTP RVVPNSLDVH GNHLEATTST TLNHTHAYHE PLLVSTCNFS NQSNYNMIDS  240
SPRVAPNSLD VHENHLGATT STTLNHAHVY YEPLQTQHFY SSWGSANNFP NQYPVNYNME  300
MTTLNHTAMS SSSEQPTHVR EDDPLLEAHG INTFGSKQEQ QDDLSKMTSM TTNSHELPTH  360
ARKYEPPLPE VHEDDTFGSK QKQQDYLSET GDIINDWVLS DSDFDISNLD STDWLLSDSD  420
FDMIDLDFSD ILDDDNHKPN S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-20	1	98	61	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-20	1	98	61	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-20	1	98	61	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-20	1	98	61	168	NO APICAL MERISTEM PROTEIN
4dul_A	1e-20	1	98	61	168	NAC domain-containing protein 19
4dul_B	1e-20	1	98	61	168	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	2e-23	NAC domain containing protein 3