PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00940-augustus-gene-0.40-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CPP
Protein Properties Length: 856aa    MW: 93826.9 Da    PI: 5.0316
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00940-augustus-gene-0.40-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR29.31.7e-095435671640
                                            TCR  16 kYCeCfaagkkCseeCkCedCkNke 40 
                                                     YCeCfaag +C e C+C+dC+Nk 
  maker-scaffold00940-augustus-gene-0.40-mRNA-2 543 SYCECFAAGLYCVEPCSCQDCFNKP 567
                                                    6**********************96 PP
2TCR50.93e-16614652139
                                            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                                    ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+C++CkN 
  maker-scaffold00940-augustus-gene-0.40-mRNA-2 614 RHKRGCNCKKSSCLKKYCECFQGGVGCSINCRCKGCKNA 652
                                                    589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163430.353529654IPR005172CRC domain
PfamPF036387.1E-6543566IPR005172CRC domain
SMARTSM011140.0032544569IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011143.2E-17614655IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.4E-12616652IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MDTPVKNQLA TTSKFEDSPV FNYISNLSPI EPVKSIPTDH AFTSLTFASP SSVFPSPQIG  60
IRKESRFSIR RHQFSDPSKN ESSQIGNKNN TSEGVSVAVQ PSDSCTENFE CCTSASSARE  120
ITTEPTDEPS GLVIELPNTL KYDCGSPDSD MVPPDATKTD TAPGIAGTLE SFDEFLMDDS  180
KGKLHSFESE KNLRNICSIE QNIEACDWVS FVSGAADLLN LDSSMIEEHF EGQNHKSVDP  240
GTISFLSTVL QLPQDNANDV EKTEAISIIS CKQREMGETV TQSRAIGNLK KTDQTSAILS  300
STLLDKLAVS DLSDKVDDKG KKCMDSSSKP GSHRLCSIRR RCLVFETSGA HKNKPICDSN  360
SSSPAIPSDC EVFPNEKQAQ INTASGYSST MLPGIGLHLN ALATAPTDNK VVKLESPAFR  420
SKQIIMLNSL VPCNPLTPGQ NPLDKSLTLK TLEGELASHY NEAQVTENAP QTSTSAVSEE  480
FDQSSPRRKR HEVQGILQWF QHLSWCLGTE VECYVFYKCS FDINNTADLI DPCSLTGHVL  540
QYSYCECFAA GLYCVEPCSC QDCFNKPIHE STVLETRRNI ESRNPLAFAP KVIRDADVVP  600
EFGDESNKTP ASARHKRGCN CKKSSCLKKY CECFQGGVGC SINCRCKGCK NAFGRKDGAE  660
ETDIEGEELE ACKMNALDAS LHTVKEDDKE HLEFPITELS ENSRSLSQES EACKNALEIS  720
LQEVNESEKE HPDLSITPSS EISRPSIRLP FSFSGKLPLS SLLSVGSSAQ FCTSQKPRTK  780
YSFSSRLKFE THLQMIPEDE TPEALNSTSD VKSTSPNSKR VSPPKQEFGS TAQRMGRKLI  840
LRSIPPFPSL SSTGEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1253265113120Protein lin-54 homolog
5fd3_B8e-1253265113120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913149.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A2N9FIW00.0A0A2N9FIW0_FAGSY; Uncharacterized protein
STRINGVIT_14s0030g01800.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.11e-75Tesmin/TSO1-like CXC domain-containing protein