PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00963-snap-gene-0.46-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 218aa    MW: 24083.8 Da    PI: 9.2759
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00963-snap-gene-0.46-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.27.9e-151332151798
                                                E--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT- CS
                                         B3  17 vlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegD 78 
                                                +lp+k +++    g++   +++l++     r W vkl +     +s++++ ++GW+ Fv +n L++gD
  maker-scaffold00963-snap-gene-0.46-mRNA-1 133 YLPRKGCTKDytkGSI--LTVKLQV---VDRLWPVKLYVyegMYRSSSCIVSGGWSAFVTENTLRVGD 195
                                                6777777555432222..3333333...459******44687666777999***************** PP

                                                EEEEEE-SSSEE..EEEEE- CS
                                         B3  79 fvvFkldgrsefelvvkvfr 98 
                                                ++vF+l+ r++  l+v++fr
  maker-scaffold00963-snap-gene-0.46-mRNA-1 196 VCVFELIMRDDVVLKVHIFR 215
                                                *******9999999***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-16101215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-16102215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-15108215No hitNo description
PROSITE profilePS5086311.152109217IPR003340B3 DNA binding domain
SMARTSM010191.7E-6109217IPR003340B3 DNA binding domain
PfamPF023626.4E-12133215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNARVSFIRR ECKGLSLGVG GNRVGCKSSP LVKLESDCNL DDVSSSHDQC PKKDGGVGIS  60
TNGRRLKGKA LVKNQEYKAL ESKQELMTTN GKAENLVRAN AFKSENALFT VIIHPSYLNG  120
KDCASLPHGS INYLPRKGCT KDYTKGSILT VKLQVVDRLW PVKLYVYEGM YRSSSCIVSG  180
GWSAFVTENT LRVGDVCVFE LIMRDDVVLK VHIFRCLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-197721517141B3 domain-containing transcription factor VRN1
4i1k_B8e-197721517141B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887458.11e-104B3 domain-containing transcription factor VRN1-like
RefseqXP_023891771.11e-103B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_023891772.11e-103B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A2N9FPV11e-35A0A2N9FPV1_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-19B3 family protein