PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00998-augustus-gene-0.28-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 344aa    MW: 38800.6 Da    PI: 7.9975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00998-augustus-gene-0.28-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-06180199120
                                                    EEETTTTEEESSHHHHHHHH CS
                                        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                                    ++Cp+C k+F+r  nL+ H+
  maker-scaffold00998-augustus-gene-0.28-mRNA-1 180 FSCPICFKTFNRYNNLQMHM 199
                                                    89*****************9 PP
2zf-C2H215.16.9e-05264286123
                                                    EEETTTTEEESSHHHHHHHHHHT CS
                                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                    + C +Cgk F  k + ++H +++
  maker-scaffold00998-augustus-gene-0.28-mRNA-1 264 FMCRKCGKAFAVKGDWRTHEKNC 286
                                                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-5180199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.66E-8180202No hitNo description
SMARTSM003550.17180202IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138180207IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SuperFamilySSF576675.66E-8259284No hitNo description
Gene3DG3DSA:3.30.160.603.9E-6260284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035550264284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787264284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MADPYSNFFT RSWFNFMPIH SHYSSFPSYS NPILNSYPPQ YSNSNYILNN KPSIQYCQPS  60
NIPSSSSPSS PPLKEALPLI NNLSPSRQEE HESSSTSAME EEEDKNMNKD DGDETVTVAL  120
HIGLPSSNTD LGYSRLTSPL SDVTVKDGAR EVSWYPLGTL NKGQYWIPTP SQILIGPTQF  180
SCPICFKTFN RYNNLQMHMW GHGSQYRKGP DSLKGAQPTA MLRLPCYCCA PGCKHNIEHP  240
RAKPLKDFRT LQTHYKRKHG TKPFMCRKCG KAFAVKGDWR THEKNCGKVW YCICGSDFKH  300
KRSLKDHIKA FGNGHGAFGI DCLQEVDDPT SDIEHDGDSS MPNE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873786.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-125ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2N9GM630.0A0A2N9GM63_FAGSY; Uncharacterized protein
STRINGGLYMA12G36660.21e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]