PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01006-snap-gene-0.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 575aa    MW: 63175.7 Da    PI: 5.0096
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01006-snap-gene-0.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.63.9e-1402035621374
                                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppse 68 
                                                lv++L++cAeav++++l  a+al++++  la +++ +m+++a+yf+eALa+r+++    ly    p++
  maker-scaffold01006-snap-gene-0.25-mRNA-1 203 LVHALMACAEAVQQSNLPVAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYG----LY----PQN 262
                                                689****************************************************....44....333 PP

                                       GRAS  69 tseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                                                  +++  + l+    f+e++P+lkf+h+taNqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa Rp
  maker-scaffold01006-snap-gene-0.25-mRNA-1 263 PLNQSLFDILQ--MHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRP 328
                                                33222334333..35***************************************************** PP

                                       GRAS 137 egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEal 202
                                                +g+p +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L+++p   Ea+
  maker-scaffold01006-snap-gene-0.25-mRNA-1 329 GGAPAFRLTGIGPPAPDDSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRPseIEAV 396
                                                *************************************************************98889** PP

                                       GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                                                aVn+v++lh+ll++++++e+    vL++vk+++P++v+vveqea+hn++ Fl+rf+e+l+yys++fds
  maker-scaffold01006-snap-gene-0.25-mRNA-1 397 AVNSVFELHKLLARPGAIEK----VLSVVKQMKPEIVTVVEQEANHNGPVFLDRFTESLHYYSTMFDS 460
                                                ********************....******************************************** PP

                                       GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                                                le ++   ++e++++++++lg++i+nvvaceg +r+erhetl +Wr r+++aGF pv+l+++a kqa+
  maker-scaffold01006-snap-gene-0.25-mRNA-1 461 LEGSV---NSEDKVMSEVYLGKQICNVVACEGVDRVERHETLTQWRTRMGSAGFAPVHLGSNAFKQAS 525
                                                ****7...99999******************************************************* PP

                                       GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                +ll+ ++ ++gyrvee++gsl+lgW++rpL+++SaW+
  maker-scaffold01006-snap-gene-0.25-mRNA-1 526 MLLALFAgGEGYRVEENNGSLMLGWHTRPLIATSAWQ 562
                                                ************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.2E-3345111IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.2E-3445118No hitNo description
PROSITE profilePS5098567.191177541IPR005202Transcription factor GRAS
PfamPF035141.4E-137203562IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MKRELDPHQN HNLQPLPDSS VTGSSSTGKA KMCWEEEVQQ DGGMDELLAV LGYQVRASDM  60
AEVAQKLELL EDLMGNAQGD GLSHLATETV HYNPSDLSTW LQSMLTELNP LDPLVPPPPS  120
PHHQPPPATL DDSFLGESSN ITQPQAQIES PSSREHKRLK PSIEPASEIV VPGSSIFSAL  180
TFPTAESTRP VVLIDSQENG IRLVHALMAC AEAVQQSNLP VAEALVKQIG FLAVSQAGAM  240
RKVATYFAEA LARRIYGLYP QNPLNQSLFD ILQMHFYETC PYLKFAHFTA NQAILEAFEG  300
KKRVHVIDFS MNQGMQWPAL MQALALRPGG APAFRLTGIG PPAPDDSDHL QEVGWKLAQL  360
AETIHVEFEY RGFVANSLAD LDASMLELRP SEIEAVAVNS VFELHKLLAR PGAIEKVLSV  420
VKQMKPEIVT VVEQEANHNG PVFLDRFTES LHYYSTMFDS LEGSVNSEDK VMSEVYLGKQ  480
ICNVVACEGV DRVERHETLT QWRTRMGSAG FAPVHLGSNA FKQASMLLAL FAGGEGYRVE  540
ENNGSLMLGW HTRPLIATSA WQLAHNNRAG SVLTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6619856114378Protein SCARECROW
5b3h_A5e-6619856113377Protein SCARECROW
5b3h_D5e-6619856113377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886357.10.0DELLA protein GAIP-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2N9EU520.0A0A2N9EU52_FAGSY; Uncharacterized protein
STRINGcassava4.1_033968m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein