PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01008-snap-gene-0.50-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

HD-ZIP

Protein Properties

Length: 259aa MW: 29874.7 Da PI: 6.6713

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01008-snap-gene-0.50-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.9e-19	73	124	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++F++++ p +++++LA++lgL rqV +WFqNrRa+ k maker-scaffold01008-snap-gene-0.50-mRNA-1 73 QRFNDEQIKLLETMFKEESRPESRKKQKLANELGLHPRQVATWFQNRRARLK 124 68************************************************98 PP
2	HD-ZIP_I/II	100.8	1.2e-32	73	162	4	93
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayd 71 +r+++eq+klLE++F+ee++ e+++K++la+eLgl+prqva WFqnrRAR ktkq+E++y+ Lk++y maker-scaffold01008-snap-gene-0.50-mRNA-1 73 QRFNDEQIKLLETMFKEESRPESRKKQKLANELGLHPRQVATWFQNRRARLKTKQIEREYSLLKASYG 140 79**************************************************************** PP HD-ZIP_I/II 72 alkeenerLekeveeLreelke 93 +l+++ e+L+++++ L +l++ maker-scaffold01008-snap-gene-0.50-mRNA-1 141 TLASNFESLKRDNQLLLLQLQK 162 ************99988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.79E-18	60	128	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.058	66	126	IPR001356	Homeobox domain
SMART	SM00389	1.9E-16	68	130	IPR001356	Homeobox domain
CDD	cd00086	2.91E-15	73	127	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-17	73	133	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-16	73	124	IPR001356	Homeobox domain
PRINTS	PR00031	4.4E-5	97	106	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	101	124	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.4E-5	106	122	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.4E-14	126	167	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MEEERDIPTP YMTGVRMEQL VGCFFLRIHT PSKSQIYYYM FITSKCWLKK RCALIAIESS 60 HTMASKKKNK DMQRFNDEQI KLLETMFKEE SRPESRKKQK LANELGLHPR QVATWFQNRR 120 ARLKTKQIER EYSLLKASYG TLASNFESLK RDNQLLLLQL QKLKNMLDKQ HGKNGMSSDS 180 NSVKGDSTSE SKEKPSVLSE SVNHNINMFI GDANCEDAEC TDEETGTLNI AEPIDDSLTS 240 SEDEDWCSFL DQSSGNSQW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	126	RRARLKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023874761.1	1e-123	homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A2N9FZI8	1e-90	A0A2N9FZI8_FAGSY; Uncharacterized protein
STRING	EOY23889	2e-54	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16057	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	4e-33	homeobox 7