PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01024-augustus-gene-0.33-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 87aa    MW: 9977.1 Da    PI: 4.5218
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01024-augustus-gene-0.33-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-092580145
                                                   TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHH CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwq 45
                                                   ++ ++++E+ l+ + +++ G              +W++Ia +++ gRt++++k +w 
  maker-scaffold01024-augustus-gene-0.33-mRNA-1 25 KLEFSEDEETLITRMFNLVGESfnelmrkivlilRWTLIAGRIP-GRTAEEIKKYWT 80
                                                   678*****************99**********************.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9112083IPR017877Myb-like domain
SMARTSM007174.0E-52485IPR001005SANT/Myb domain
PfamPF002496.2E-82680IPR001005SANT/Myb domain
CDDcd001671.39E-62779No hitNo description
Gene3DG3DSA:1.10.10.601.0E-102781IPR009057Homeodomain-like
SuperFamilySSF466897.72E-62883IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MADLDHTSDG SSVDSRGESN SQDSKLEFSE DEETLITRMF NLVGESFNEL MRKIVLILRW  60
TLIAGRIPGR TAEEIKKYWT SRYSTSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875995.15e-42transcription factor CPC-like isoform X2
TrEMBLD7TEM71e-35D7TEM7_VITVI; Uncharacterized protein
STRINGVIT_12s0059g02360.t012e-36(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26923178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.16e-14MYB_related family protein