PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01035-augustus-gene-0.33-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family DBB
Protein Properties Length: 382aa    MW: 42585.5 Da    PI: 6.3672
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01035-augustus-gene-0.33-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.6e-072164239
                                       zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                                   ++r C+ ++e  + l+C+ ++  lC  C  e H+       Ht+
  maker-scaffold01035-augustus-gene-0.33-mRNA-2 21 QKRLCDYCSEATALLYCRADSAKLCFLCDREVHSTnqlfskHTR 64
                                                   6789*****************************66788888886 PP
2zf-B_box24.94.1e-0865108341
                                       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                                                     r C+ +++ ++++fC + ++ lC++C  e H +      H+++p
  maker-scaffold01035-augustus-gene-0.33-mRNA-2  65 SRLCDSCDSSPASIFCSTECSVLCQNCDWERH-SlslshvHNRRP 108
                                                    689****************************9.658887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3672067IPR000315B-box-type zinc finger
SMARTSM003363.9E-132067IPR000315B-box-type zinc finger
PfamPF006437.3E-62164IPR000315B-box-type zinc finger
CDDcd000213.62E-62367No hitNo description
PROSITE profilePS5011910.53763109IPR000315B-box-type zinc finger
PfamPF006437.5E-665108IPR000315B-box-type zinc finger
CDDcd000211.82E-566109No hitNo description
SMARTSM003360.4368109IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MTDSQAQIKK QHQNIMSPHI QKRLCDYCSE ATALLYCRAD SAKLCFLCDR EVHSTNQLFS  60
KHTRSRLCDS CDSSPASIFC STECSVLCQN CDWERHSLSL SHVHNRRPLE GFTGCPSVNE  120
LLGIVGYEET GHKALFLKDE STGGGDGFDG LSDFLVWDTP CAVSLDALIS STSSEHDFQA  180
MGVPPLPKNR NAACGQYKDE IINQLRELVK LEPKLNCENV DAEPLSGFQP LLSEQNVQQG  240
DMLTGFAHNA EPFVFPRFEA SAFQCCTDSG EAANHFFLPN SSTRSYLEES HVVPDKHSDI  300
SCSVPHSNDG CEGHSQYPIK SETSSTFQRV ASHELNSQER DSALSRYKEK KKTRRYHCPP  360
FAHKCMKSTL GMNHGRFEQK AG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908887.10.0zinc finger protein CONSTANS-LIKE 13 isoform X1
TrEMBLA0A2N9ECH00.0A0A2N9ECH0_FAGSY; Uncharacterized protein
STRINGEMJ022771e-141(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-82B-box type zinc finger protein with CCT domain