PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01044-snap-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 236aa    MW: 28043.8 Da    PI: 9.554
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01044-snap-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.51.4e-10581312290
                                       FAR1  22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtklele 84 
                                                +++ngei +++f  ++eg++  +  + +ke+r+r++ ++gCka+l++ ++k      ++w+vt ++ +
  maker-scaffold01044-snap-gene-0.26-mRNA-1  58 REKNGEIGRHNFFYYREGRQPLKMVDPSKEQRNRKSLKCGCKAHLTIVLRKsidifPKEWHVTIFVVD 125
                                                368999******************999********************99887766679********** PP

                                       FAR1  85 HnHela 90 
                                                Hn el 
  maker-scaffold01044-snap-gene-0.26-mRNA-1 126 HNYELL 131
                                                **9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-858131IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MENECPIDET GVIEEYEDIN LIENEFEPFV VFLVKKKFSF SIKIMRIKMV LQFEKVVREK  60
NGEIGRHNFF YYREGRQPLK MVDPSKEQRN RKSLKCGCKA HLTIVLRKSI DIFPKEWHVT  120
IFVVDHNYEL LSLSSVRFLS ANQVNTKDDK NCILLYKKAG LSIGEIIHVM ELKKNVKYGH  180
LPFFQRDIRN LYVKMRKMYV VNDVMDLSQF CKVAKEKNSK FQYAFTTDDE KRILHV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622071.18e-59protein FAR1-RELATED SEQUENCE 11-like isoform X4
TrEMBLA0A072UI162e-58A0A072UI16_MEDTR; FAR1 DNA-binding domain protein
STRINGAES623837e-56(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1516549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.17e-34FAR1-related sequence 11