PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01051-snap-gene-0.46-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 133aa    MW: 15114.8 Da    PI: 6.271
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01051-snap-gene-0.46-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.44e-0770129162
                                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC 62 
                                                +++ +Y+++ GF v k++s+k  ++ e+ + t  C+  g+++ + ++ + + +++++t   C
  maker-scaffold01051-snap-gene-0.46-mRNA-1  70 EYFTRYGNKKGFAVAKRTSRKG-NHVEVESLTVACNSAGNQQIKASN-SLKAQPQSKTGRWC 129
                                                589**************99998.7778***************99988.55555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-470126IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEEEITSGSR LVELNEHNSD NKMKDTMDLK NNELNEDNAE NEKEETRKVK DKVEDPCVGM  60
LFGSIDDIME YFTRYGNKKG FAVAKRTSRK GNHVEVESLT VACNSAGNQQ IKASNSLKAQ  120
PQSKTGRWCH FRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873634.11e-68protein FAR1-RELATED SEQUENCE 4-like
TrEMBLA0A2N9J8F91e-33A0A2N9J8F9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13793717