PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01064-snap-gene-0.47-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Nin-like

Protein Properties

Length: 224aa MW: 25917.3 Da PI: 4.8025

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01064-snap-gene-0.47-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.9	3.5e-27	63	113	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl maker-scaffold01064-snap-gene-0.47-mRNA-1 63 SKMLSKETISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 113 57899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.383	47	133	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-22	66	113	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MASFPTDPLY ASLDLEPTTA IQVAGFEPQN QTLILSSNNE KRDKEVKEER RKKRCREERC 60 SSSKMLSKET ISQYFYMPIT QAAKELNVGL TLLKKRCREL GIRRWPHRKL MSLQTLIKNV 120 QELAKEEGEE SEVKLREAIE ILEGERKLLE EIPDAQLEDN TKRLRQACFK ANYKKRKLMG 180 MVDSQSCSSS NRSSMDGTGD EKEEEEDDQD DEEEEESLVG PLFF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023886578.1	1e-108	protein RKD2-like
Swissprot	Q9M9U9	3e-60	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2N9H073	1e-105	A0A2N9H073_FAGSY; Uncharacterized protein
STRING	EOY21863	1e-87	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	5e-58	RWP-RK domain-containing protein