PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01093-augustus-gene-0.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 253aa    MW: 29046.6 Da    PI: 6.5166
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01093-augustus-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-151057148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT++Ed +l + v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
  maker-scaffold01093-augustus-gene-0.27-mRNA-1 10 KGPWTEQEDFKLNCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                                                   79********************************************97 PP
2Myb_DNA-binding54.62.4e-1763108148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  maker-scaffold01093-augustus-gene-0.27-mRNA-1  63 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                                                    89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.959557IPR017930Myb domain
SuperFamilySSF466894.12E-297104IPR009057Homeodomain-like
SMARTSM007172.9E-13959IPR001005SANT/Myb domain
PfamPF002492.9E-141057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-191164IPR009057Homeodomain-like
CDDcd001672.72E-91257No hitNo description
PROSITE profilePS5129427.33458112IPR017930Myb domain
SMARTSM007177.6E-1762110IPR001005SANT/Myb domain
PfamPF002499.9E-1663107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2465111IPR009057Homeodomain-like
CDDcd001678.76E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKMVQEGIRK GPWTEQEDFK LNCFVGLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTPQE ERLVLELHSK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQEKKRAMS  120
PSSSSSNCCS SSSPSNPIVE SLPLTETREK SFYDTGGPDI KASAEKQVEE EQGGENGYSM  180
DDIWKDIENT LIPGNDGYTE EGSSFPCPTL DFPTWDQYHS ESPWTMAEES KMFLPTCDQF  240
FPCSDIDTAY LTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-27101124105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023890064.11e-163transcription factor MYB59 isoform X1
SwissprotQ9LX822e-87MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A438G1I01e-115A0A438G1I0_VITVI; Transcription factor MYB59
STRINGVIT_06s0004g04140.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.16e-87myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]