PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01109-augustus-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 719aa    MW: 78036.8 Da    PI: 6.0967
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01109-augustus-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.4e-11299355155
                                            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  maker-scaffold01109-augustus-gene-0.18-mRNA-1 299 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 355
                                                    57*******************4444.2455535555.779999**************98 PP
2AP246.68.3e-15398449155
                                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  maker-scaffold01109-augustus-gene-0.18-mRNA-1 398 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 449
                                                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.73E-19299365No hitNo description
SuperFamilySSF541719.81E-15299365IPR016177DNA-binding domain
PfamPF008471.2E-8299355IPR001471AP2/ERF domain
SMARTSM003801.1E-22300369IPR001471AP2/ERF domain
PROSITE profilePS5103217.319300363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-12300364IPR001471AP2/ERF domain
PRINTSPR003673.9E-6301312IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17398459IPR016177DNA-binding domain
PfamPF008471.0E-9398449IPR001471AP2/ERF domain
CDDcd000188.18E-25398459No hitNo description
PROSITE profilePS5103219.045399457IPR001471AP2/ERF domain
SMARTSM003801.5E-33399463IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18399458IPR001471AP2/ERF domain
PRINTSPR003673.9E-6439459IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MASMNWLGFS LSPQELPSQP SDQDHSQNAV SRLGFNSDDI SGTDVSGECF DLTSDSTPPS  60
LNLPPPFGIL EAFNRNNQPQ DWNMKSLGMN SSANYKTTSD LSMLMGSSCS SQSLENQDHQ  120
PKLENFLGRH SFGHHDQSAA YNNITGDYMF NNCSLQLPSE ATNGVSNSTD GDDGSGSGNG  180
SINNNNSIGL SMIKTWLRNQ PAPQTQQDNN TNKNDGGASG GGNNGSLTSA HTLSLSMSTG  240
SSSTLPLLTA SNAGGGSGGE SSSSDNNKQP NITTGLDSQT GAIEAVPRKS IDTFGQRTSI  300
YRGVTRHRWT GRYEAHLWDN SCRREGQTRK GRQGGYDKEE KAARAYDLAA LKYWGTTTTT  360
NFPISNYEKE LEEMKHMTRQ EYVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA  420
GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSILESS TLPIGGAAKR  480
LKDVEQAEMT VDGQRTDDHD NVSSQLTDGI NNYGGAPHHG WPTLAFQQAQ PYSMHYPYGQ  540
RVWCKQEQDS DPPHSFQDLH QLQLGNTHNF FQPNSVLHNL MGMESASMEH SSGANSVIYS  600
NGGGATADGY GSNGGYIMPL TTVIANEGNN QNQGNNGFGD SEVKALGYDN VFASTDPYHA  660
RNLYYLSQQS STGVIKASTY DQGSACNNWV PTAVPTLAPR SNNMAVCHGA PTFTVWNDT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872279.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A2N9EQC50.0A0A2N9EQC5_FAGSY; Uncharacterized protein
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-128AP2 family protein