PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01138-augustus-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family BES1
Protein Properties Length: 676aa    MW: 76079 Da    PI: 5.5266
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01138-augustus-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221411.1e-43672052133
                                         DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedD 65 
                                                    +s+r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +D
  maker-scaffold01138-augustus-gene-0.30-mRNA-1  67 ASRRCRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPD 130
                                                    7899************************************************************ PP

                                         DUF822  66 Gttyr...kgskpl...eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpsp 122
                                                    Gtt++   +g +p+   ++  +  ss+ +s++++   ++ ++s  +s  e  ++s+k + +p +
  maker-scaffold01138-augustus-gene-0.30-mRNA-1 131 GTTFPsrsQGPRPMggaSAVVTPSSSHMVSQQTPAAsLRGVTSGYQSSGEYNASSMKGVYMPNS 194
                                                    ****9766666777754444555666678888888878889999999999999999******99 PP

                                         DUF822 123 ssldsislasa 133
                                                    s +d  s++ +
  maker-scaffold01138-augustus-gene-0.30-mRNA-1 195 SPYDLSSSTRS 205
                                                    99998877644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.8E-3968198IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514456.67E-177223672IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.3E-196226671IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.6E-102232662IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-63263277IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-63284302IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-63306327IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060310318IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008427.1E-9389398IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.7E-63399421IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-63516532IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-63533544IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-63551574IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.1E-9554564IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.7E-63591613IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.1E-9642656IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008427.1E-9657671IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MATDMQKLIG TSEEDEEEDM DMDVKEEDDG DGEENGEKHV ATPVMVEVGG MATSGSNNQF  60
QYHDQQASRR CRPLEEKERT KLRERHRRAI TARILAGLRR HGNYNLRVRA DINDVIAALA  120
REAGWVVLPD GTTFPSRSQG PRPMGGASAV VTPSSSHMVS QQTPAASLRG VTSGYQSSGE  180
YNASSMKGVY MPNSSPYDLS SSTRSQTPPM IVDLAPKLPE RDFAGTSYVP VYVMLPLGVI  240
NMKCEMVDPD GLLKQLRVLK SVNIDGVMVD CWWGIVEAHA PQEYNWSGYK RLFQMVRELK  300
LKLQVVLSFH ECGGNVGDDV CIPLPHWVAE IGRSNPDIFF TDKEGRRNPE CLSWGIDKDR  360
VLRGRTAVEV YFDYMRSFRT EFDEFFEDGI ISMIEVGLGP CGELRYPSFP VKHGWRYPGI  420
GEFQCYDQYL LRSLRKAAED RGHSSWARGP DNAGSYNSRP LETGFFCDGG DYDGYYGRFF  480
LNWYSQIVVD HGDRVLSLAK LTFGGTRIAA KSVCRILIAE QLPGIYWWYK TASHAAELTA  540
GFYNSCNRDG YAAIAAMLKK HGAALNFTCA EIQMLGQHED FMEALVDTEG LVWQVLNAAW  600
DACIPVTSEN TLSCHDRIGY NKILDTAKPM NDPDGRHFSS FTYLRVSPLL MERHNFMEFE  660
RFVKKMHGEE VLDLQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ukp_A1e-15222767010445Beta-amylase
1ukp_B1e-15222767010445Beta-amylase
1ukp_C1e-15222767010445Beta-amylase
1ukp_D1e-15222767010445Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273843.10.0PREDICTED: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A2N9FIH10.0A0A2N9FIH1_FAGSY; Beta-amylase
STRINGVIT_15s0046g02640.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]