PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01138-snap-gene-0.38-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 634aa    MW: 71351.2 Da    PI: 4.9034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01138-snap-gene-0.38-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.6e-064494821755
                                                HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                                N++f  Lr+++P+ +        +Ka+iL+ +++Y+k+L+
  maker-scaffold01138-snap-gene-0.38-mRNA-1 449 NEKFLVLRSMVPSiS------EIDKASILTDTIKYLKELE 482
                                                9************66......8***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-3815162IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.515432481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-6441487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-6446486No hitNo description
SuperFamilySSF474593.27E-9447497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-9449495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MANGCQTHEG VPENLRKQLA VAVRSIQWSY AIFWSLSTTQ QGVLKWGDGY YNGDIKTMKT  60
VQTGELKADK TGLQRSEQLR ELYLSLLEDE TDQQQQAKRP SAALSPEDLT DAEWYYLVCM  120
SFVFNPGQGL PGRALASGQT IWLSNAQYAD SKIFSRSLLA KVSEDPSLLQ HIKASLLELS  180
KPVCSDKSSS APHKGDDDRD PMCAKVNHEI VDTLGLENLY SPSEEIKFDQ EGINELGGNI  240
REEINMDSPD ECSNGCEHNY WTEDSFMLEG INGGASQVQS WHLMDDDFSN GVQDSMHSSD  300
CISEAFVNQE KAISTPKQEN VNHGHLQELQ KSNHTKLSSL DLGADDDLHY KRIISAILGS  360
SAQLIENRCF QNGDCKSSFM SWKRESSDDA RRPQVHQRML KKVLFTVPLM YGGGLLRSQK  420
ENGGKDRLRK LESDDICIGN VLSENRRENE KFLVLRSMVP SISEIDKASI LTDTIKYLKE  480
LEARVEELES CMDSVDFEGR ARRDQDIIEH TSDNYDIKKI DNGKKHWINK RKACDIDETD  540
PELNRVVPED GLPLDVKVSI KEQEVLIELR CPYREYILLD VMDGINNLHL DAHSVQSSAL  600
DGILTLTLKS KFRGAAIASV GMIKQALWKI AFKC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874003.10.0transcription factor MYC1-like
TrEMBLA0A2N9FJ760.0A0A2N9FJ76_FAGSY; Uncharacterized protein
STRINGEOX959660.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-154bHLH family protein