PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01179-augustus-gene-0.45-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 188aa    MW: 22143.9 Da    PI: 5.2457
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01179-augustus-gene-0.45-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.3e-1916102195
                                                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS
                                             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkG 64 
                                                    ffkv++p++ ++  rl++p  f+++ + +   +k+ +l++ +g+ W vk+  +k s+++++ +G
  maker-scaffold01179-augustus-gene-0.45-mRNA-1  16 FFKVFLPEYCSE--RLRIPDAFVSQLDRS--VPKKAILRSGNGKIWHVKV--EKISDGMFFLSG 73 
                                                    899997777665..69*******988655..5668***************..99999989999* PP

                                                    HHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                                             B3  65 WkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                                    W+eFvk+n ++ gDf+vF+++g++ f   +k
  maker-scaffold01179-augustus-gene-0.45-mRNA-1  74 WQEFVKDNLIELGDFLVFQYNGHDVF--GFK 102
                                                    ********************987776..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2211109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.21214107IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-2314109IPR015300DNA-binding pseudobarrel domain
CDDcd100174.56E-1715104No hitNo description
SMARTSM010191.6E-1516107IPR003340B3 DNA binding domain
PfamPF023621.9E-161699IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MMKNMSSTTT KRCTRFFKVF LPEYCSERLR IPDAFVSQLD RSVPKKAILR SGNGKIWHVK  60
VEKISDGMFF LSGWQEFVKD NLIELGDFLV FQYNGHDVFG FKLFGNSGCE KGEIETHVSI  120
NSTIEYINVE EEEEEETEEE ENDSDNDDDE DYEDEVRNKK KNAKNIRKRR PRTKYCDRGQ  180
KKIVWKIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8545131e-127KP854513.1 Quercus variabilis microsatellite Qv473 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874412.12e-88B3 domain-containing protein REM20-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-23B3 family protein