PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01188-augustus-gene-0.31-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

LBD

Protein Properties

Length: 219aa MW: 23945.2 Da PI: 7.6158

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01188-augustus-gene-0.31-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.8	2.6e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredams 59 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++ ++++++e++r+++++ maker-scaffold01188-augustus-gene-0.31-mRNA-1 2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMAFISNVSESQRPALFQ 65 6************************************************************* PP DUF260 60 slvyeAearardPvyGavgvilklqqqleqlkaelall 97 sl++eA+ r+ +Pv+Gavg++++++++++q+++e++l+ maker-scaffold01188-augustus-gene-0.31-mRNA-1 66 SLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLR 103 ******************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.788	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMA FISNVSESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLTAGATI 120 PASDEVSEAE VTCTNMWNLG DPSPNSRAKV SPKRRRSGDQ NKPYQTDLDL CLTPAKVSVY 180 NPEIRRPGTP SMNSEESVTT FESGFADQYG ERKLLNLFN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB555698	2e-71	AB555698.1 Castanea crenata DNA, microsatellite marker PRD34.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023922590.1	1e-151	LOB domain-containing protein 38-like
Swissprot	Q9SN23	2e-83	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2N9FHF5	1e-132	A0A2N9FHF5_FAGSY; Uncharacterized protein
STRING	XP_002525255.1	1e-117	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-85	LOB domain-containing protein 38