PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01189-augustus-gene-0.32-mRNA-2

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

HB-other

Protein Properties

Length: 1861aa MW: 209182 Da PI: 4.9802

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01189-augustus-gene-0.32-mRNA-2	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.9e-18	20	76	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ + yps++ r+eL++klgL++rq ++WF+ rR k++k maker-scaffold01189-augustus-gene-0.32-mRNA-2 20 KTKRKMKTASQLEILEKTYAVEAYPSEALRAELSAKLGLSDRQLQMWFCHRRLKDRK 76 6799***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-17	8	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.57E-15	16	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.325	17	77	IPR001356	Homeobox domain
SMART	SM00389	2.5E-16	19	81	IPR001356	Homeobox domain
Pfam	PF00046	6.4E-16	20	76	IPR001356	Homeobox domain
CDD	cd00086	6.33E-14	20	76	No hit	No description
SMART	SM00571	9.7E-22	599	658	IPR018501	DDT domain
PROSITE profile	PS50827	16.873	599	658	IPR018501	DDT domain
Pfam	PF02791	1.2E-16	600	655	IPR018501	DDT domain
Pfam	PF05066	9.3E-16	781	849	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	8.6E-8	998	1040	IPR028942	WHIM1 domain
Pfam	PF15613	1.7E-13	1182	1254	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1861 aa Download sequence Send to blast
MEVAIGSDGE KKKPPEVENK TKRKMKTASQ LEILEKTYAV EAYPSEALRA ELSAKLGLSD 60 RQLQMWFCHR RLKDRKGPSS GKRQLKDSPA REEMVVAEVG NELGSGSGSA SSLLADSRRV 120 VGRPGVGVAV ARMGGDVAVM SRYYEPQQTI AELRAIAFVE AQLGEPLRED GPILGMEFDS 180 LPPDAFGAPI GAVTVGQQKQ SGRPFEPKLY ERPDAKPIKR ENLAEKARKE GEREGTVVLL 240 REFLRGNWLR ESNPSVEERQ REEEEQRMRG KGAGRALHEY QFLPEQPTVR TDAYERVAPS 300 YHYGSPTDGP NARTSSVISG RSFMHGNEQV PSGYSFQGQV PGLNLLPNQG RQGHLLPSVS 360 GEYDTVPRKN AFPNIAMDAH FAAHPITQLE NPFLPSDRRV THDEDVPRME RKRKSEEARI 420 AREVEAHEKR IRKELEKQDI LRRKREEQIR KEMERHDRER RKEEERLLRE KQREEERYQR 480 EQRRELERRE KFLQKESLRA EKLRQKEELR REKEAARLKA ANERAIARRI AKESMELIED 540 ERLELMELAT SSKGLPSIVS LDYDTLQNLE LYRDMLAVFP PKSVCLKRPF TIQPWTDSEE 600 NVGNLLMVWR FLITFADVLG LWPFTLDEFI QAFHDYDPRL LGEINIALLR SIIKDIEDVA 660 RTPATGLGTN QYSAANPGGG HPQIVEGAYA WGFDIRNWQG HLNPLTWPEI LREFALSAGF 720 GPQLKRKNIE QTYLRDDNEG NDGEDVISNL RNGAAVESAV AIMQERGFSN PRRSRHRLTP 780 GTVKFAAFHV LSLEGSKGLN ILEVAEKIQK SGLRDLTTSK TPEASIAAAL SRDSKLFERT 840 APSTYCVRSA YRKDPADAEA ILSMARERIR IFKSGIVDGE DADDAERDGD SESDGGEDPE 900 VDDLGTETNS NKEDQNSKET TEFSATPLGN GKGSDDVLET PQVSLGNIDE GLFSMQSGGN 960 GDKDSGLFVA QSVDASGIGN NMVVGNQEDA DIDESNPGES WVQGLMEGEY SDLSVEERLS 1020 ALVALIGIAI EGNSIHVVLE ERLEAANALK KQMWAEAQLD KRRMKEEFVL RTTYSSFAGN 1080 KAEPNLLTIS LAEDRQSPLC TINDKNNETS VAPAIEQEQL NNIQNDQNYL NSLPSEENLQ 1140 IHDYPTGPDN LPYQQPGYVA ERSRSQLKSY IGHKAEEMYV YRSLPLGQDR RRNRYWRFIT 1200 SASRNDPGCG RIFVELHDGQ WRLIDSEEGF DALLSSLDVR GVRESHLHTM LQKIEMSFKE 1260 SVRMNMRSAM GRHSGETVKT EAIEMVPGLD FSVGTDSPRS TVCADSDMSE TSTSFTIELG 1320 NNEREKNDAL KRYQDFEKWM WKDCVNSAVI FAMKYGKKRD LQLLSTCDYC HDVYSFEDNH 1380 CPSCHKTYSS SRNSNFSEHV SQCEEKPKFD AQNAWHGSLS APLRIRLLKV QLSLIEVSIP 1440 LEALQPLWTN SYRKSWGMKL HSSSSAEDLL QALTLLESAI KRDYLSSNFE STTELLGSSN 1500 PLGCGTDYSF GPETVLVLPW IPHTTAAVAL RLMEFDASIS YMLKQKVDSQ KDKGPWVIKL 1560 PSKYATVKNS KDDDTGHTPY QVEHLKEEKW VDSGSGLASS GRGRGCRGRG RGRIRGGSSQ 1620 GRVISSRAES GKRTSSTKSD RLGQALGWRG RPRGRGGRRR GRRSIRSRQR PAKVVVVGGD 1680 RDNSKDIILD KSPIGLEWNG DESMQLPGED AGSTSSSERS DYDYENGQAT GDEYDDMVMD 1740 DFAVGYPGRS DDLLQGTYYN VDVEEEEEEE EEEDEDDVDD NEGDAEDEQG DLDIDEYING 1800 DSDEEGNGGG DTEQNLDQDQ GLFKIRPAPM QPVDTELIRP LQSSTVGVWR GGRRKFRHID 1860 D

Sequence ? help Back to Top

Protein Sequence Length: 1861 aa Download sequence Send to blast

MEVAIGSDGE KKKPPEVENK TKRKMKTASQ LEILEKTYAV EAYPSEALRA ELSAKLGLSD  60
RQLQMWFCHR RLKDRKGPSS GKRQLKDSPA REEMVVAEVG NELGSGSGSA SSLLADSRRV  120
VGRPGVGVAV ARMGGDVAVM SRYYEPQQTI AELRAIAFVE AQLGEPLRED GPILGMEFDS  180
LPPDAFGAPI GAVTVGQQKQ SGRPFEPKLY ERPDAKPIKR ENLAEKARKE GEREGTVVLL  240
REFLRGNWLR ESNPSVEERQ REEEEQRMRG KGAGRALHEY QFLPEQPTVR TDAYERVAPS  300
YHYGSPTDGP NARTSSVISG RSFMHGNEQV PSGYSFQGQV PGLNLLPNQG RQGHLLPSVS  360
GEYDTVPRKN AFPNIAMDAH FAAHPITQLE NPFLPSDRRV THDEDVPRME RKRKSEEARI  420
AREVEAHEKR IRKELEKQDI LRRKREEQIR KEMERHDRER RKEEERLLRE KQREEERYQR  480
EQRRELERRE KFLQKESLRA EKLRQKEELR REKEAARLKA ANERAIARRI AKESMELIED  540
ERLELMELAT SSKGLPSIVS LDYDTLQNLE LYRDMLAVFP PKSVCLKRPF TIQPWTDSEE  600
NVGNLLMVWR FLITFADVLG LWPFTLDEFI QAFHDYDPRL LGEINIALLR SIIKDIEDVA  660
RTPATGLGTN QYSAANPGGG HPQIVEGAYA WGFDIRNWQG HLNPLTWPEI LREFALSAGF  720
GPQLKRKNIE QTYLRDDNEG NDGEDVISNL RNGAAVESAV AIMQERGFSN PRRSRHRLTP  780
GTVKFAAFHV LSLEGSKGLN ILEVAEKIQK SGLRDLTTSK TPEASIAAAL SRDSKLFERT  840
APSTYCVRSA YRKDPADAEA ILSMARERIR IFKSGIVDGE DADDAERDGD SESDGGEDPE  900
VDDLGTETNS NKEDQNSKET TEFSATPLGN GKGSDDVLET PQVSLGNIDE GLFSMQSGGN  960
GDKDSGLFVA QSVDASGIGN NMVVGNQEDA DIDESNPGES WVQGLMEGEY SDLSVEERLS  1020
ALVALIGIAI EGNSIHVVLE ERLEAANALK KQMWAEAQLD KRRMKEEFVL RTTYSSFAGN  1080
KAEPNLLTIS LAEDRQSPLC TINDKNNETS VAPAIEQEQL NNIQNDQNYL NSLPSEENLQ  1140
IHDYPTGPDN LPYQQPGYVA ERSRSQLKSY IGHKAEEMYV YRSLPLGQDR RRNRYWRFIT  1200
SASRNDPGCG RIFVELHDGQ WRLIDSEEGF DALLSSLDVR GVRESHLHTM LQKIEMSFKE  1260
SVRMNMRSAM GRHSGETVKT EAIEMVPGLD FSVGTDSPRS TVCADSDMSE TSTSFTIELG  1320
NNEREKNDAL KRYQDFEKWM WKDCVNSAVI FAMKYGKKRD LQLLSTCDYC HDVYSFEDNH  1380
CPSCHKTYSS SRNSNFSEHV SQCEEKPKFD AQNAWHGSLS APLRIRLLKV QLSLIEVSIP  1440
LEALQPLWTN SYRKSWGMKL HSSSSAEDLL QALTLLESAI KRDYLSSNFE STTELLGSSN  1500
PLGCGTDYSF GPETVLVLPW IPHTTAAVAL RLMEFDASIS YMLKQKVDSQ KDKGPWVIKL  1560
PSKYATVKNS KDDDTGHTPY QVEHLKEEKW VDSGSGLASS GRGRGCRGRG RGRIRGGSSQ  1620
GRVISSRAES GKRTSSTKSD RLGQALGWRG RPRGRGGRRR GRRSIRSRQR PAKVVVVGGD  1680
RDNSKDIILD KSPIGLEWNG DESMQLPGED AGSTSSSERS DYDYENGQAT GDEYDDMVMD  1740
DFAVGYPGRS DDLLQGTYYN VDVEEEEEEE EEEDEDDVDD NEGDAEDEQG DLDIDEYING  1800
DSDEEGNGGG DTEQNLDQDQ GLFKIRPAPM QPVDTELIRP LQSSTVGVWR GGRRKFRHID  1860
D

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023901361.1	0.0	homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2I4F9F2	0.0	A0A2I4F9F2_JUGRE; homeobox-DDT domain protein RLT2-like isoform X1
STRING	XP_002517852.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator