PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01193-augustus-gene-0.35-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 165aa    MW: 18393 Da    PI: 6.8947
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01193-augustus-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.99.9e-4561051100
                                         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvye 64 
                                                    +Ca+Ck+lrr+CakdC++apyfp+++++kfa+vhk+FGasnv+k+l++lp ++r da+sslvye
  maker-scaffold01193-augustus-gene-0.35-mRNA-1   6 PCASCKLLRRRCAKDCIFAPYFPSDDTHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYE 69 
                                                    7*************************************************************** PP

                                         DUF260  65 AearardPvyGavgvilklqqqleqlkaelallkee 100
                                                    A+ar+rdPvyG+vg i+ lq+q++ql+ +la++++e
  maker-scaffold01193-augustus-gene-0.35-mRNA-1  70 ANARVRDPVYGCVGAISFLQNQVSQLEMQLAVAQAE 105
                                                    *******************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.0215106IPR004883Lateral organ boundaries, LOB
PfamPF031958.9E-446103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCAKD CIFAPYFPSD DTHKFAIVHK VFGASNVSKM LQELPVHQRA  60
DAVSSLVYEA NARVRDPVYG CVGAISFLQN QVSQLEMQLA VAQAEILCIQ MQQEPNLPTH  120
QIDQVDKSFL LSTNNFDNNN IPQYLSFASS SNVIQDPLKR ESLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4821197124LOB family transfactor Ramosa2.1
5ly0_B2e-4821197124LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882040.11e-114LOB domain-containing protein 12
SwissprotQ8LBW33e-81LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2R6QJD91e-102A0A2R6QJD9_ACTCH; LOB domain-containing protein
STRINGPOPTR_0001s28840.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-83LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]