PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01198-snap-gene-0.34-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 174aa    MW: 19607 Da    PI: 8.8095
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01198-snap-gene-0.34-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171074146
                                               TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqk 46
                                               +g WT+eEd++l d++k +G g                    +W++Ia++++ gRt++q+k++w++
  maker-scaffold01198-snap-gene-0.34-mRNA-1 10 KGLWTKEEDKILMDYIKVHGEGkwnlaakktdlkrsgkscrlRWSLIAKRVP-GRTDNQVKNYWNS 74
                                               678*************************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.877580IPR017930Myb domain
SMARTSM007174.8E-14978IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-15952IPR009057Homeodomain-like
SuperFamilySSF466895.19E-181075IPR009057Homeodomain-like
PfamPF002493.3E-111053IPR001005SANT/Myb domain
CDDcd001672.08E-111376No hitNo description
Gene3DG3DSA:1.10.10.601.4E-115380IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MMEEGNTSKK GLWTKEEDKI LMDYIKVHGE GKWNLAAKKT DLKRSGKSCR LRWSLIAKRV  60
PGRTDNQVKN YWNSRLSKKL GIKKQNSHLG VTGLNNSRTV IVSETARTVS PCCNTSKAIE  120
DEASIGTQNF GKASDSQDSE ISESYINSFW EYSESDLDLS NPDGLLGWDF FNFA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910831.11e-111transcription factor WER
TrEMBLA0A2N9IZC89e-94A0A2N9IZC8_FAGSY; Uncharacterized protein
STRINGXP_010243029.11e-39(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.19e-37myb domain protein 66