PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01265-snap-gene-0.37-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 178aa    MW: 20140.6 Da    PI: 6.9328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01265-snap-gene-0.37-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-181472148
                                               TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48
                                               +g+WT+eEd+ l+ +++ +G g            +W++Ia++++ gRt++++k++w+++l
  maker-scaffold01265-snap-gene-0.37-mRNA-1 14 KGPWTPEEDQVLISYIQTYGHGnwralpkqagllRWSAIAARLP-GRTDNEIKNFWNSHL 72
                                               79******************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.09E-16379IPR009057Homeodomain-like
PROSITE profilePS5129419.484976IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-241273IPR009057Homeodomain-like
SMARTSM007175.4E-161374IPR001005SANT/Myb domain
PfamPF002491.4E-161472IPR001005SANT/Myb domain
CDDcd001671.33E-131672No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MVRTPCCEKM GLKKGPWTPE EDQVLISYIQ TYGHGNWRAL PKQAGLLRWS AIAARLPGRT  60
DNEIKNFWNS HLKKRSLAQN LATSTTTNQA VGTPGYMLDR DFQGQVHAPN LPQESWKFSC  120
LDPIRMEAEG SSQTISMETE ETFNNDSSKN NDEMEFWYKL FIKSGESSQP HVNLGQSG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876738.11e-118transcription factor MYB4-like
SwissprotQ9SJX83e-36MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2I4EMU32e-48A0A2I4EMU3_JUGRE; myb-related protein Myb4-like
STRINGXP_006487722.12e-43(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-38myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]