PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01270-snap-gene-0.37-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 265aa    MW: 30468.9 Da    PI: 5.0926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01270-snap-gene-0.37-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-131562148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                               +g+WT+eEd++l  ++k++G  +W+  ++   + R++k+c++rw +yl
  maker-scaffold01270-snap-gene-0.37-mRNA-1 15 KGAWTPEEDKKLTAYIKRYGIWNWSQMPKPADLARSGKSCRLRWMNYL 62
                                               79******************99****999999**************97 PP
2Myb_DNA-binding56.85.2e-1868112147
                                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                rg++++eE+e +++++++lG++ W++Ia++++ gRt++++k++w++ 
  maker-scaffold01270-snap-gene-0.37-mRNA-1  68 RGNFSKEEEETILKCHEELGNR-WSAIAAKLP-GRTDNEIKNYWHTN 112
                                                89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.911062IPR017930Myb domain
SuperFamilySSF466893.37E-2912109IPR009057Homeodomain-like
SMARTSM007171.9E-81464IPR001005SANT/Myb domain
PfamPF002492.2E-111562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-231669IPR009057Homeodomain-like
CDDcd001678.25E-81762No hitNo description
PROSITE profilePS5129424.9863117IPR017930Myb domain
SMARTSM007172.3E-1767115IPR001005SANT/Myb domain
PfamPF002491.6E-1668112IPR001005SANT/Myb domain
CDDcd001671.14E-1170113No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2670116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVKAQHAEEK MPLRKGAWTP EEDKKLTAYI KRYGIWNWSQ MPKPADLARS GKSCRLRWMN  60
YLRPDIKRGN FSKEEEETIL KCHEELGNRW SAIAAKLPGR TDNEIKNYWH TNLKKRFRNN  120
WSTSSTTASL TVQNRDVEAN QNDSSGINLL HCDASKVSNL DGNHPMSPQL STDDPSTSST  180
DPAAEIDRNQ TIEENVCSSE TFEELQSFWE QPFSLEDLCM VETDTAGFIA QTTKTGFPEP  240
IYPCISYEDV HHDLWLNLPN QEEMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27131175108B-MYB
1h8a_C3e-27211711128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884712.11e-171transcription factor MYB4-like
TrEMBLA0A2N9IFE61e-136A0A2N9IFE6_FAGSY; Uncharacterized protein
STRINGXP_008224916.12e-81(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-53myb domain protein 14