PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01279-snap-gene-0.42-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Nin-like

Protein Properties

Length: 208aa MW: 24112.8 Da PI: 8.3547

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01279-snap-gene-0.42-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.1	3e-27	80	130	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl maker-scaffold01279-snap-gene-0.42-mRNA-1 80 SKMLSKETISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 130 57899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.451	64	150	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-22	83	130	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MASFPTDPLY ASLDLEPTPT IQDDFFFSCG NRPEVWNEIV AGFEPQNQAL ILSSTIEKKG 60 KEVKEERKKK RCREERCSSS KMLSKETISQ YFYMPITQAA KELNVGLTLL KKRCRELGIR 120 RWPHRKLMSL QMLIKNVQEL DKEEGEESEA KLREAIEILE GERKLLEEIP DAQLEDNTKR 180 LRQACFKANY KKRKLMGMVD SQSCSSSN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023886578.1	1e-123	protein RKD2-like
Swissprot	Q9M9U9	2e-60	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2N9H073	1e-115	A0A2N9H073_FAGSY; Uncharacterized protein
STRING	EOY21863	4e-89	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-58	RWP-RK domain-containing protein