PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01289-snap-gene-0.36-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 287aa    MW: 32984.5 Da    PI: 8.8384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01289-snap-gene-0.36-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161360148
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                               rg+W+++Ed +l+ ++k +G g W+  +++ g++R++k+c++rw++yl
  maker-scaffold01289-snap-gene-0.36-mRNA-1 13 RGAWSAWEDNILKSYIKIHGEGKWTDLPQRAGLRRCGKSCRLRWLNYL 60
                                               89********************************************97 PP
2Myb_DNA-binding53.84.3e-1766127147
                                                TSSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqky 47 
                                                rg+++++E++l+++++k+lG++                +W++Iar+++ gRt++++k++w++ 
  maker-scaffold01289-snap-gene-0.36-mRNA-1  66 RGNFSEDEEDLIIKLHKLLGNRygkspsppepscneccSWSLIARRLP-GRTDNEIKNYWNTI 127
                                                89**********************************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.218864IPR017930Myb domain
SuperFamilySSF466892.52E-2211124IPR009057Homeodomain-like
SMARTSM007171.1E-111262IPR001005SANT/Myb domain
PfamPF002491.3E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-211467IPR009057Homeodomain-like
CDDcd001672.96E-91560No hitNo description
SMARTSM007171.1E-1565130IPR001005SANT/Myb domain
PROSITE profilePS5129414.12965132IPR017930Myb domain
PfamPF002496.3E-1566127IPR001005SANT/Myb domain
CDDcd001672.37E-1068128No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2268132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MERRPCCPKG VIRGAWSAWE DNILKSYIKI HGEGKWTDLP QRAGLRRCGK SCRLRWLNYL  60
RPDIKRGNFS EDEEDLIIKL HKLLGNRYGK SPSPPEPSCN ECCSWSLIAR RLPGRTDNEI  120
KNYWNTILSK RVQGDKIHEQ SSRRIRKLTS DSNPGIKPVA HPVIRPKAVR CTKVILPWQP  180
NNNQVFNENI VPYGNSENLF PSVQPENNIS DFLIDLDINY LLRSDVQNSD GHQTNEINEH  240
DIVLDFPLPP HSVIPSSTLS GFTECRLTHY DGQDGVRHKC MRTRGEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20111325108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023911881.11e-152transcription factor MYB4-like
TrEMBLA0A2N9HNK71e-108A0A2N9HNK7_FAGSY; Uncharacterized protein
STRINGEOY303006e-76(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-52myb domain protein 4