PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01317-snap-gene-0.37-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 395aa    MW: 42134.5 Da    PI: 7.1382
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01317-snap-gene-0.37-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.88.7e-22291353163
                                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                                e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN+ L++e+++++ e+++l +e+
  maker-scaffold01317-snap-gene-0.37-mRNA-1 291 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENSNLRSEVNRIRSEYDQLLAEN 353
                                                89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.2E-30198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.7E-42136259No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-17284349No hitNo description
SMARTSM003381.3E-21291355IPR004827Basic-leucine zipper domain
PfamPF001705.0E-20291353IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.277293356IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-11294350No hitNo description
CDDcd147028.90E-25296347No hitNo description
PROSITE patternPS000360298313IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGSSEMDKQA KEKEPKTPPV TTTAQEQSTT TTTGAVNPDW SGFQAYSPIP PHGFLASSPQ  60
APPYMWGVQH IMPPYGTPPH PYVAMYPHGG IYAHPSIPGS YPFSPFAMPS PNGMAEASGN  120
TPGNMEADNK PSEVKEKLPI KRSKGSLGSL NMITGKNNEH GKTSGASANG VYSKSAESGS  180
EGTSDGSDAN SQTEASQNGN SAHGPQNGGP NTPHAMVNPA MAMVPMSGAG AAPLAVAGPT  240
TNLNIGMDYW GAPTSSAIPG MRGKVPSTPV AGGIVTGSRD SVQSQLWLQD ERELKRQRRK  300
QSNRESARRS RLRKQAECDE LAQRAEVLKE ENSNLRSEVN RIRSEYDQLL AENASLKERL  360
GEVPGHEDLR SGRNEQHLSS DTQQTRQTEL VQGGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307313RRSRLRK
2307314RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912319.10.0bZIP transcription factor 16
SwissprotQ501B21e-171BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A2I4H7V60.0A0A2I4H7V6_JUGRE; bZIP transcription factor 16-like
STRINGEOY252260.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-149basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]