PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01338-augustus-gene-0.35-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 327aa    MW: 37069 Da    PI: 5.7325
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01338-augustus-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.92.6e-25135195259
                                                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                                    dD ++WrKYGqKe+ ++++prsY+rCt +   gC+++k+v+r +edp++ +itY g H+++
  maker-scaffold01338-augustus-gene-0.35-mRNA-1 135 DDDHAWRKYGQKEILNAKHPRSYFRCTRKydqGCRATKQVQRMEEDPQMYQITYIGIHTCK 195
                                                    8**************************998899**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-24123195IPR003657WRKY domain
PROSITE profilePS5081119.634129192IPR003657WRKY domain
SuperFamilySSF1182905.89E-24131195IPR003657WRKY domain
SMARTSM007741.1E-35134196IPR003657WRKY domain
PfamPF031063.1E-24135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
METTHPWPEG PSTTRNKVIK ELVEGRDFAT QLKSILHKPL EITRDHASPS PSPHELVSKI  60
LRSFTETLSV LASSCESGEV IHQNLAVSHA DSHCDDPRSD DSGESRKRPT PKDRRGCYKR  120
RKTTQTWTTV SRTTDDDHAW RKYGQKEILN AKHPRSYFRC TRKYDQGCRA TKQVQRMEED  180
PQMYQITYIG IHTCKDTLKA PQIIMEPDPW ETYIVSNPPD SMWGNGKPAD HDQALSSSTT  240
LTIKQESKEE ALSDLTDNLS SLGTDNNNNS YLWTDFKDFD LVESAIMSPK LGSDNGDVVS  300
TMYSCTETAS HGLDFCHFDG DFNFDDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-25128195269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105121RKRPTPKDRRGCYKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894740.10.0probable WRKY transcription factor 70 isoform X1
RefseqXP_023894741.10.0probable WRKY transcription factor 70 isoform X2
TrEMBLA0A2N9EI061e-161A0A2N9EI06_FAGSY; Uncharacterized protein
STRINGGLYMA04G40130.11e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-46WRKY DNA-binding protein 70